Isosphaera pallida: Isop_3293
Help
Entry
Isop_3293 CDS
T01407
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ipa
Isosphaera pallida
Pathway
ipa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Isop_3293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipa03019
]
Isop_3293
03400 DNA repair and recombination proteins [BR:
ipa03400
]
Isop_3293
Enzymes [BR:
ipa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Isop_3293
Messenger RNA biogenesis [BR:
ipa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Isop_3293
DNA repair and recombination proteins [BR:
ipa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Isop_3293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
HTH_40
ResIII
DuffyBP_N
Motif
Other DBs
NCBI-ProteinID:
ADV63855
UniProt:
E8R5A2
LinkDB
All DBs
Position
complement(4815103..4818000)
Genome browser
AA seq
965 aa
AA seq
DB search
MTKDNPAPLRIVPGQGPDHDPAHPQEENDPLVRLLRQRFGLKQFRVAQRPVIEAVLKGRD
VLCVMPTGGGKSLCYQVPALALNGVTLVVSPLIALMKDQVDALNARGIAATLINSTLDPS
ETTERLRDIEAGRYHLVFVAPERFRSGRFLEAIRAARPALLAVDEAHCISQWGHDFRPDY
ARLGYARRDLGSPPCIALTATATPEVRDDILKQLELRDPNIFVSGFARPNLSLRIVHAQR
DADKLDHVLNLLRHRGGPAIVYTSSRPKCEHVAERLALELREPIALYHAGLTRDQREQAQ
NEFMSGRARIVVATNAFGMGVDKADIRTVIHFNIPGTVEAYYQEAGRAGRDGLHSVCLLL
HSFSDRKIQELFIEQENPPRELIAAVWETLRRLKDDPIELTQADLRDLLEINAHERAIGA
ALKALERAGHIEQFRPWENQAIVRINRDPEDPPLLQRVSSQAQTKRHVVMAIETIVGNRL
NEPVYFQPELLAAQIGMDRSNLGRTLRQLSREIPLDYIPPFQGNAIRLIDPETPVRKLRV
DFAALSEKRRREQARLDQMTAFTRAKGCRQVFILDYFGESHSQPCGICDNCLERAGQTDR
LDLDNASPTGDPRAQIGPGPQPIDTPRGREVILKTLSGVARSRGQVGKIAVAQMLTGSKS
EKVRRLGLAGLSTFGILGAFLQTEVVAILDALIAAGLLASEEIGRGRPVIKLTAEGQRHL
KSLQTEHPPELLLDLPSDLLAKVRGHANATGSPRPSATPSPPLSRTANEPQRMERPTARQ
DSTPVRPALEPIVSIAPPAAPAPRVESPTTLPIPNADPPPTRFQVVQAAEPPPIIPVPPT
PPAPPPQSQPQPKSPATPNDASQRTPLEIAAYAPTEEWTLRLLERGFTAGEIAAIRGLEV
NVILRHAGLLSRQGHRLPLNAFLDAETLRAWEDHVQRHGQQPPPNLSPTHATLWPLYIIQ
RVHLS
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggacaatccggctcccctccggattgttcctggccaggggccggaccacgac
cccgcccatccgcaggaggagaacgaccctctggtgcgattgctccgccagcggttcggc
ctgaagcagttccgggtcgcccagcgtccggtgatcgaggcggttctcaaagggcgggac
gtgctgtgcgtcatgcccaccggcggcggcaagagcctctgttaccaagtgccggcgctg
gcgctcaatggcgtcaccctggtcgtgagtccgctgatcgccttgatgaaggaccaggtc
gacgccctgaacgctcgggggatcgccgcgactctcatcaacagcaccctcgacccctcc
gagaccaccgaacggctccgcgacatcgaagccggacggtaccacttggtattcgtggcc
ccagagcgttttcgctccggacggtttttggaggcgatccgcgccgcccgtcccgcgctt
ttggcggtggatgaggcccattgcatcagtcagtggggccacgacttccggcccgactac
gcccggttggggtacgcccgccgcgacctcggctcgcccccctgcatcgccctgaccgcc
accgccacccccgaggtgcgcgacgacatcctcaaacaactggaactgcgcgatcccaac
atcttcgtctcaggattcgcccgccccaacctcagcctgcggatcgtccacgcccaacgc
gacgccgacaagctcgaccacgtcttgaatctgctcaggcaccgcgggggacccgcgatc
gtttacacctccagccggcccaagtgcgagcatgtggccgaacgtctcgccctagaactc
cgcgagccaatcgcgctttatcacgccggcttgacccgcgaccaacgtgaacaggcacaa
aacgaattcatgagcgggcgcgcccggatcgtcgtggccaccaacgccttcggcatgggc
gtggacaaggccgatatccgcaccgttatccactttaacatccccggaaccgttgaagcc
tactaccaagaggctggccgcgccggccgcgacggcctgcactcggtctgcctgctgctg
cactcgtttagcgaccgcaagatccaggaactgttcatcgagcaggagaacccgccccgc
gagttgatcgccgcggtgtgggaaaccctgcggcgtctcaaggacgacccaatcgaattg
acccaggccgacctgcgcgaccttttggagatcaacgcccatgagcgggccatcggcgcg
gcgctgaaggcgctggagcgggccgggcatatcgagcagttccgtccttgggaaaaccag
gcgattgtgcggatcaaccgcgacccggaggacccaccgctgctccagagggtctcaagc
caggcgcagaccaagcgtcacgtggtcatggcgatcgagacgatcgtaggcaatcggctc
aacgaaccagtgtattttcagccggagcttctggcagctcaaatcggcatggatcgatcc
aacctagggcggaccctgcggcaactgtcgcgggaaatcccgctggactacattccgcca
ttccaaggcaacgcgatccgactcatcgaccccgagacgccggttcgtaaacttcgggtc
gattttgccgcgctgagcgagaaacgccgccgcgaacaagcccggctcgaccaaatgacc
gcgttcacccgcgccaaagggtgccgccaggttttcattctcgactatttcggcgaatcc
cactcccaaccttgcggaatctgcgacaattgcttggaacgagccggccaaactgaccga
ctcgatctcgacaacgcctcgccgaccggcgatccccgcgcccagatcggtcctggcccg
caaccgatcgacacccctcggggccgcgaggtcatcctcaaaacgctctcaggagtggcc
cgctcgcgaggacaggtcggcaaaatcgctgtggctcaaatgctcaccggatccaaatct
gagaaagtgcgccgtttaggattggccggcctcagcaccttcggcatccttggcgcgttt
cttcaaaccgaagtcgtggcgattctggacgccttgatcgccgcgggtctgctcgcctcc
gaggagatcggccgcggccgtccggtgatcaagctcaccgcagaggggcagcgtcacctc
aagtcgctccagaccgaacatccccccgaactcctcctcgacctgccttccgacctattg
gccaaggtgcggggccacgcgaacgcgactggctcgccccgcccatccgcgacaccatcc
ccgccgctcagccgaaccgcgaacgaaccccagcggatggagcgacctaccgctcgtcag
gattcgactcccgttcgacccgccttggaaccaatcgtctccatcgcgcctcccgccgcg
cccgcccctcgggtggagtcgcccacgacgcttcccatccccaacgcggacccgcccccc
acgcggtttcaggttgttcaagcggccgagccgccccccatcattcccgtccctccaacc
ccgcccgcacccccgccccaatcccaacctcaacctaagtcccccgccaccccaaacgac
gcctcccaacgcaccccgctcgaaatcgccgcctacgccccgaccgaagagtggaccctc
cggttgctcgaacgtggtttcaccgccggcgagattgccgccatccgtgggctggaggtc
aacgtcatcctgcgccacgcgggtctgctctcgcgccaagggcaccgcctgcccctgaac
gcctttctcgatgccgagaccttgcgcgcctgggaggaccacgtccaacgccacggtcag
caaccgccgccgaacctcagccccacccacgccaccctgtggccactttatattatccaa
cgagttcacttgtcataa
DBGET
integrated database retrieval system
