Isosphaera pallida: Isop_3325
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Entry
Isop_3325 CDS
T01407
Name
(GenBank) UvrA family protein
KO
K03701
excinuclease ABC subunit A
Organism
ipa
Isosphaera pallida
Pathway
ipa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Isop_3325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipa03400
]
Isop_3325
DNA repair and recombination proteins [BR:
ipa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Isop_3325
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Isop_3325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_21
nSTAND1
AAA_16
AAA_29
RsgA_GTPase
AAA_25
ATPase
DUF4350
DnaJ_CXXCXGXG
cobW
MMR_HSR1
HUTI_composite_bact
Motif
Other DBs
NCBI-ProteinID:
ADV63887
UniProt:
E8R5Y5
LinkDB
All DBs
Position
complement(4862281..4869093)
Genome browser
AA seq
2270 aa
AA seq
DB search
MAASDLSIQGAREHNLRDVSLVLPRNHLICFTGVSGSGKSSLAFDTLYAEGQRRYVESLS
SYARQFLGQLPKPEVDRIDGLSPSIAIQQKTGGRNPRSTVGTITEIHDYLRVLYARVGIG
HCPQCRRPIEAQTRDQIVARALELPESTPFLVLAPVIRGQKGEHKDALADLARRGYTRAR
VDGHLVSLGEDLRLDRQTKHDIELVIDRLKATPSARARIAEAVEAAIAVGDGTVILAVEG
QPDLVLSSKYACPSCQIGFEPPSPQLFSFNSPQGMCPTCEGLGEARRFDPAKLVPNPKLS
VAQGAVEPIGPLKKMRRWKRHILEGVAVNYETGEDGPPPGTLLHTPWERLEPRWRNLWLH
GSGDRRLVFRWHNPRGQSWSHADTFPGFLAELTEKYKSSKGTNAAALEQYMTIGVCDACR
GTRLNPRANGVTVGGLTLPQLESLSIGQALAFIDALMSPPCQTGSAPSPSAEADPKPSGR
GRGRAASNWNHGGWEPLSVVPNAQHPITPLSPLSRRIAAELLKEIHNRLSFLVNVGLDYL
TLDRAAPTLSGGEAQRIRLASQVGAGLVGIVYILDEPSIGLHPRDNDRLIASLERLRDQG
NTVVVVEHDEDTMRAADYLVDFGPGPGVKGGRIVAQGTIQDLANTPASLTGQYLSGRKTI
AGPSARRQPGPARLIVEGAAHHNLQNIDVEIPLGLFVAVTGVSGSGKSSLVNDILLQALA
RELNHAETTPGPHRAIRGIEHLDKVIEIDQSPIGRTPRSNPATYTKLFDLIRDLYAQLPE
SKARGYPPGRFSFNVAGGRCEACEGNGSNRLEMDFLADVWVTCPVCEGHRFNRETLQVRF
KGKNIADVLEMDVQEALEHFANVPRIAAWLRTLHDVGLDYIKLGQPSPTLSGGEAQRIKL
ARELARKATGRTLYILDEPTTGLHFEDVHRLLNVLHDLVDRGNTVVVIEHNLDVIKTADW
IIDLGPEGGSGGGRVVAVGPPETVADHPASHTGRALKRLWERAAIRSMTPSTSPNSDSSP
SQTSRGRDAIKRTAALSPTQAARGGSGSSPAPTSRRTQRDATPDATRGIVIEGAEQHNLK
HVNAFIPRDSLTVCSGPSGSGKSSLAIDTLYAEGQRRYVESLSSYARQFLAPLQKPRVER
ISGLSPAISIEQKTTSKSPRSTVGTVTEIYDYLRILYARLGVPHCPKCAVPVGTQTADEV
IDQILARYSGCRLLLLAPIERRDGERLEEVWDRLRAAGFARVRIDGVVCPLEEPPSLSDQ
RRYELEVVVDRVIASPKSRSRLADSVEAALDLGKGVVRVAREVSDGDRPSETGRTREQRP
VAVEVESFSLHRTCPSCGRGFEELTPHHFSFNSPLGWCPACQGLGVQKGASLETLVPDDR
KTIRGGAVRCWPAPGTNRLFDRMLEHSGLDLDVPINRLREAQRRLLLHGSDQWREVPAGN
GPDGTPEPGFAFQFKGLFPAIEQAGRTSFFYRWRLQGLVDEVLCASCMGGRLRDDAAAVR
FEGMTLEAICNLPLSELLKFVKGYKPDREAKKIAGDLIREIRDRVGFLVEVGLDYLTLSR
PTPTLSGGEAQRIRLASQIGSGLTGVLYVLDEPTIGLHPRDNARLLGALKRLRDLGNTLV
VVEHDKEIIQSADHLFDFGPGSGQQGGHIVASGTPTSVSRVKGSPTGDYLAGRKAIPVPT
NRRPAAPGQTPELVLRGVRHQNLKDIDVRIPLGVVTVVTGVSGSGKSSLVEEVLWKGAAR
HLHRAKPTPGLHERIDGLEHLNKVISVDQTPIGFTPTSNAATYTGAFDLIREVFAKTPLA
RARGYTARRFSFNQAGGRCEACEGAGRLKIEMHFLPDVWVDCERCNGKRYTAETLKVTFR
GKTIADVLEMTVDEALEWFDAVPRLKRILKTLSDVGLGYLRLGQSATTLSGGEAQRIKLA
AELSRPDTGKTLYILDEPTTGLHFDDVRKLLVVLHRLADLGNTVVVIEHNLDVIKTADWI
IDLGPEAGERGGSIVAEGPPEAVARVKASRTGLFLAKALSESPHAERPVFDPKAEARNRL
EEQARMRREQAALEAQLGQTRPPWELDGRRWHTVDRVGRTGRPPRWEGAALAEVVDAIED
LGRGQLPPTDWAERAVVRIGGFLRALTGHEWVLTLKFTVPKRGVDLAKLTRDLNLVPFAE
HRPPVLCDSERISITQPSPAAWEITILIHSAADVRTEAFRRFLSEATRAYIQNARQDSSF
MMKAMARMIADMVVPDQADAASIEESPTHAQGRTVRTDRAGMTRKHVVNE
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctccgatctttctattcagggcgcgcgggaacacaatttgcgcgacgtctcg
ttggttttgccgcgcaatcacctcatctgctttacgggggtctcgggttcgggcaaaagt
tcattagccttcgacaccctctacgccgagggccaacggcgttatgtcgaaagcctctcc
agctacgcccgccagttcctgggtcaactgcctaagccggaggtggaccgaatcgacggc
ctgtccccctcgattgcgatccaacaaaagaccggaggccgcaacccccgcagcaccgtc
ggcacgatcaccgagattcacgactacctacgcgtgttgtacgcgcgggtggggatcggc
cattgtccccaatgccggcgtcccattgaagcccaaacccgcgaccaaatcgtggcccgg
gcgctggagttgcccgaatcaaccccgtttctggtgctggccccagtgattcgcggccaa
aaaggggaacacaaggacgccctggccgacctagcgcgacggggctacacccgggcgcgg
gtcgatggccacctcgtgtcgctgggggaggatctacgtctggaccgccagaccaagcac
gacatcgaacttgtgatcgaccgactcaaggccacgcccagcgcccgcgcgcggatcgcc
gaggcggtcgaagcggccattgcagtcggcgacggcacggtgatcctggcggtggagggt
caacccgacctggtcctctcctccaagtacgcctgtcccagctgtcaaatcggcttcgag
ccgcccagcccgcaactcttcagcttcaactcgccgcaggggatgtgcccaacctgcgag
ggtttgggcgaggcccggcggttcgacccggccaagctcgtccccaaccccaagctcagc
gtcgcccagggtgcggtcgaaccaatcggtcccttgaagaagatgcgcaggtggaaacgg
cacatccttgaaggcgttgctgtcaattacgagaccggggaagacggtcctccccccggc
acgctgttgcacactccttgggaacgcctcgaaccccgctggcgcaacctgtggctccac
ggctcgggcgaccgccgcttggtcttccgttggcacaacccccgcggccaatcctggtcg
cacgccgacacgttccccggcttcctggccgaactcaccgaaaaatacaaaagctctaag
gggaccaacgccgccgctttggaacaatatatgacgatcggcgtgtgcgacgcctgcaga
gggacgcggcttaacccccgcgccaacggcgtgaccgtcggcggactgaccctcccccaa
ctcgaatccctgtcgattggtcaagccttggcgttcatcgacgccttgatgagcccgcct
tgccagaccgggtcggccccgtcgccatcggctgaggccgacccaaagccgtcgggccgc
ggccggggtcgagcggcttcgaactggaaccacggcggttgggaacccctttccgtcgtt
cccaacgcccagcatccgatcacgccgctgtcccctttgtcgcgacggatcgccgccgaa
ctcctcaaggagattcacaaccgtttgagctttctggtcaacgtgggactcgactacctg
acgctcgaccgcgccgccccgaccctctccggcggtgaggcccaacgcatccgtttggcc
agtcaggtgggagccggtctggtggggattgtctacatcttggacgagccgtcaatcggc
ctgcacccccgcgacaatgaccgtctcatcgccagtctggaacgcctacgcgaccaaggc
aacaccgtggtggtcgtcgaacatgacgaggacaccatgagggccgccgactatctggtc
gatttcggccccggtcctggcgtcaaagggggacggatcgtcgcgcagggaaccatccaa
gacctggccaacaccccggcaagccttacgggccaatatctctcgggacgtaaaaccatc
gctggtccttctgcccgccgccaacccggcccggcccgcctgatcgtggagggagccgcg
caccacaacctccaaaacatcgacgtggagattcccctggggctgtttgtcgccgtcact
ggggtctccggctcgggcaaaagctccctggtcaacgacattttgctccaagccctagcc
cgtgaactcaaccacgccgaaaccacgccgggaccccatcgagcgattcgaggaatcgaa
catctcgacaaggtgatcgagatcgaccagtcgccaattgggcgtaccccgcgctccaat
ccggcgacctacaccaagctgttcgacctgatccgcgacctttacgcccaactgcccgag
tccaaagcgcggggctatccgccgggacgtttcagcttcaacgtcgcgggtggacgctgc
gaggcgtgcgaaggcaacggctcgaaccgtctcgaaatggacttcctggccgatgtctgg
gtgacctgcccggtctgcgagggacaccggttcaaccgggaaaccctccaggtgcggttc
aaggggaaaaacatcgccgacgtgctggagatggatgtccaagaggcgttggagcatttc
gccaacgtgccgcggatcgccgcctggctgcgaactctgcacgacgtgggattggattac
atcaagctcggccagccctcgcccaccctctccggcggcgaagcccagcggatcaagctg
gcccgcgaactggcccgcaaggccaccggacgaaccctctacattctggacgaaccaacc
accgggttgcacttcgaggatgtccaccgacttttgaacgtgttgcacgacctggtagat
cgcggcaacaccgtggtggtcatcgaacacaacctcgacgtgatcaaaaccgccgactgg
atcatcgacctgggccctgaaggcggctcgggaggcggccgggtcgtcgccgtcggccct
ccggagactgtggccgaccatcccgccagccataccgggcgtgccctcaaacgtctgtgg
gaacgggccgccatccgctccatgactccttcaacgagtccgaattcggattcgtcgcct
tcgcagacctcccgaggacgcgacgcgatcaaacgaaccgcggcgctcagtccgacgcaa
gccgctcggggcggttccggttcctccccagccccaacgtcgcgccgaacccaacgcgac
gcgacgcccgacgcgacccgcggcatcgtcatcgaaggcgcagaacaacacaacctcaag
cacgtcaacgccttcattccccgtgactcgctgaccgtgtgcagcggtcccagcgggtcg
ggcaaaagctcgctggcgatcgacaccttgtacgccgaaggccagcggcgctacgtcgaa
agcctctccagctacgcccgtcagttcctagccccactgcaaaagccgcgagtggaacgg
atcagcggcctctcgcccgccatttccatcgaacagaaaaccacgagcaaatcgcctcgg
tccacagtcggtaccgtcaccgagatttatgattatcttcggattctttatgcccgccta
ggggtgccccactgccccaagtgcgccgtgccggtcggcacccagacagccgacgaggtg
atcgaccagattctggcgcgttactctggctgccgcctgcttttgctggccccgattgag
cgtcgggacggcgaaaggttggaggaggtgtgggaccgtctgcgggcggcggggtttgct
cgggtgcggatcgacggagtggtttgtccccttgaggaaccgcccagtctgtcggatcaa
cggcgttacgagctagaggtcgtggtcgatcgggtgattgcctcccccaagagtcgaagc
cgtctggctgactcggtcgaggccgcgcttgatttgggcaaaggggtggtgagggtggcc
cgcgaagtgtccgacggcgatcggccaagtgagacaggacgaacgcgggaacaacgaccc
gtcgcggtcgaagtcgagtcgttcagcctgcatcggacctgtcccagctgcggacgcggc
ttcgaggaattgacaccccaccacttctcgttcaacagcccgctgggctggtgtccggcc
tgccaggggctgggagttcagaagggagcgagtctggaaaccctggtacccgacgaccgc
aagaccatccgcggcggcgcggtacgctgctggccggcacctggaaccaaccggttgttt
gatcggatgctggaacactcgggactcgatttggatgttccaatcaatcgtctccgcgag
gcacagcggcgtctgctgctgcacggctcggaccagtggcgcgaagtgcccgccggaaac
ggtcccgacggcacccctgaaccagggttcgccttccagttcaaaggactcttcccagca
atcgagcaggccgggcggacctcgtttttctaccgctggcgattgcagggcctcgtggac
gaagtcttgtgcgcaagctgcatgggcggacgcctgcgcgacgacgcggcggcggttcgc
ttcgagggaatgactctggaagccatttgcaaccttcctctgagcgagttgctcaagttc
gtcaagggatacaagccggatcgggaggccaagaagatcgccggcgacctcatccgcgag
atccgagaccgggtcggcttccttgtcgaggtcggtctggactacttgaccctctcccgg
cccacccccaccctctccggcggcgaagctcaacgcatccgcttagcctcgcagatcggc
agcggactgaccggagtgctttacgtgctggacgagccaacgatcggcctgcacccccgc
gacaacgcccggctgctcggggcgctcaaacgcctgcgcgacctgggtaacaccctagtc
gtggttgaacatgacaaagaaatcattcaatcagccgatcatttgtttgactttggccct
ggatcgggtcaacagggcggccacatcgtcgcttcgggaacgcccacttcggtcagccgg
gtcaaaggctcgcccaccggcgactacctagcgggccgcaaggcgattcccgtccccacc
aaccgccgacctgctgcgcctgggcaaaccccggaactcgtgctgcgcggcgtgcgccat
cagaatctcaaagacatcgacgtgcgcattcctctgggagtggtcacggtggtcaccggg
gtctccggctcgggcaaaagttcgctggtcgaggaggtgttgtggaagggggccgcccgc
catctccaccgtgccaaaccaactcccggacttcacgagcggatcgatggtctggagcat
ctcaacaaagttatcagcgtcgatcaaaccccaattgggttcacgcccacctccaacgcg
gcaacctacactggggcgttcgacctgatccgcgaggttttcgccaagacgccgctggcc
cgggcgcggggctacaccgcgcgtcgcttcagcttcaaccaggccggggggcgctgcgag
gcatgcgagggggccgggcggcttaagatcgagatgcactttttgcctgatgtctgggtc
gattgcgaacgttgcaacggcaagcgttacaccgccgagaccctcaaggtgaccttccgg
ggcaagaccatcgccgacgtgttggagatgaccgtggacgaggcgttggagtggttcgac
gcggtgccccggctcaagcgcattctcaagacgctttcggacgtggggttgggttacctg
cgtctgggccagtcggccacgaccctttccggcggcgaggctcaacggatcaaactggcc
gccgagttgtcccgccccgacaccggcaaaaccctttacattttggacgaaccgaccacc
ggcctgcatttcgacgacgtgcgcaaactcctcgtggtgttgcatcgcctggctgatctg
ggcaacaccgtggtggtgatcgaacacaacctcgacgtgatcaaaaccgccgactggatc
atcgacctggggccggaggcgggcgagcgtggcggttcaatcgtggccgagggaccgccc
gaggcggtcgcccgagtcaaggccagccgcaccggcttgttcctggccaaggctctgagc
gaatcgccccacgccgaacgcccggtgttcgacccgaaggccgaagcccgcaaccgtttg
gaggaacaggctcgaatgcgtcgagagcaggcggcgctagaggctcagcttggccaaacc
cgcccgccttgggaactcgacggccgacgctggcacacggtcgatcgggttggtcgcacc
ggtcgtcctcctcgttgggagggagcggctttggccgaggtggtggacgccatcgaagac
ctggggcgcggccagttgccacccaccgattgggccgaacgcgcagtggtccgcatcggc
ggcttcctccgtgctctgaccggtcacgaatgggtgctgaccctcaagttcaccgtgccc
aaacgcggcgtcgatcttgccaagctgacccgagacctcaacctagttcccttcgccgaa
catcgaccgcccgtgctatgcgattcagaacgaatcagtataactcaaccttcacctgcc
gcctgggagatcacgatcttaatccactcggccgccgacgttcgaaccgaggcattccgc
cggtttctgtccgaggcgacccgagcgtatatccaaaacgctcgacaggattcgagtttt
atgatgaaggccatggcccggatgatcgccgacatggtggtgccggaccaggctgacgcg
gcctccattgaggagtccccgacccacgctcaaggtcgaaccgttcgaaccgatcgcgct
ggcatgaccagaaagcatgtcgtcaacgaatga
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integrated database retrieval system
