Isosphaera pallida: Isop_3471
Help
Entry
Isop_3471 CDS
T01407
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ipa
Isosphaera pallida
Pathway
ipa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Isop_3471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipa03021
]
Isop_3471
03400 DNA repair and recombination proteins [BR:
ipa03400
]
Isop_3471
Enzymes [BR:
ipa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Isop_3471
Transcription machinery [BR:
ipa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Isop_3471
DNA repair and recombination proteins [BR:
ipa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Isop_3471
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
BSH_YknX
Peptidase_M23
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-ProteinID:
ADV64028
UniProt:
E8QWY9
LinkDB
All DBs
Position
5083320..5087636
Genome browser
AA seq
1438 aa
AA seq
DB search
MSMGESAYDRINDYTAVKIGLASPDEIKAWSFGEVKKPETINYRTYRPEKDGLFCERIFG
PEKDWECACGKYRGMKFKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPSR
LGTLLDMRTTALERIIYFQDYVVIDPGDTPLKERQLLTEEEYRKYREEYGGSFEADMGAE
AIKKLLSPAKLDLVALSKQLREELTTTTSKQRIKDLTKRLKVVESLRDSNNQPEWMVLTN
VPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPDVIIRNEKRMLQQ
AVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPDL
KLHQCGLPKKIALELFSPFIIRRLRELNLADTIKSAKKMLERRVDEVWDILEEVIRNHPV
LLNRAPTLHRMGIQAFEPVLVEGNAIRIHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAM
TLMMSTNNIFSPANGKPIISPTQDIVMGSYYLTVHRPGDPGEYKEDAAGRPIQGVFSSPT
EVFLAFSLRKVGVHARIKLRLPAHKRLKGEGEKEHTPGKPIFTTVGRVIFNDILHPNMAF
YNQALGQKQLQSIIADCHQLLGRAETIALLDRMKELGFRESTRSGLSFATDDLKTPTEKD
KFIEEAEKQVTKASKNYQRGIITEQERYNRVLDIWNEVREKITTAMMEDLKNDIRNGEVY
LNPIFLMADSGARGGVEQIRQLAGMRGLMAKPSGKIIETPIKANFREGLSVLEYFSSTHG
ARKGLADTALKTADSGYLTRKLADVAQNVVVTMRDCGTTQGITKGVVYKGEKVEVSLADS
IRGRVSRVRVVHPITDEIIVNENELITIEMARQLEELQIEKLQVRSPMTCEAPLGVCQLC
YGMDLSTGRLVEEGMAVGIIAAQSIGEPGTQLTMRTFHFGGVATLGIEEKDIKCKREGFV
KYRNINAVENADGHLISLSRNGEIQVVDAKGRELEKFDVPEGAILKVADGAFVTKGTMLC
EWDPHNFPILAQVGGRAFYEDIREGETMKVETEASGLMRRTIIEHKGDLHPQIVIKGADG
QIIEAHYIPERASIEVDDGQEIKPGTLLAKTPRAAVGTQDITGGLPRVTELFEARRPKDP
AIIAEIDGVVTFLDEKRRNKRTIIIRNEASGKEVEHLVPHGKFLRVHGGDRVKAGTALVD
GPQVPHDILRISGEEEVQRYLLREIQNVYRAQRVEIDDKHLEIICAQMLRKVRVDHGGDT
GLLPGSVIDKFEFRRKNEELRDSVKIKDPGDAAELREGEVVSRDYVDKVNAEIEAKGGRK
VEWTRPQPARASTQLLGITKAAVQSESFISAASFQETTKVLTEAALAGKVDRLVGLKENV
ILGHLVPAGTGFKLHQEAEVRIRPEALEQLAERGPGYARYPRDDAPTRVRERDRDLVG
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatgggcgagagcgcttacgatcgcatcaacgactataccgccgtcaaaatcgga
ttggccagccccgacgagatcaaggcctggtctttcggcgaggtcaaaaaaccggaaacg
atcaattatcgaacctatcgtcccgaaaaggacggcctcttctgcgaacggatcttcggt
cctgaaaaggactgggagtgcgcctgcggcaaataccgggggatgaagttcaaagggatg
atctgcgaccgctgcggtgtcaaggtgacccactcgcgggtccgccgcaagcggatgggt
cacatcgaactggccgcgccggtggtccacatctggtttttcaaggcgatgccttcacgc
ctgggaactctgctggacatgcgcaccaccgcgttggagcggatcatctatttccaggac
tacgtggtgatcgatccgggtgacactccgctgaaggagcggcagttgctcaccgaggag
gagtaccgcaagtaccgcgaggagtacgggggatcgttcgaggccgacatgggggccgag
gcgatcaagaagctgctcagcccggccaagcttgacctggtggcgttgtctaagcagctg
cgggaggaactgaccacgaccaccagcaagcagcggatcaaggatttgaccaagcgtctc
aaggtggtcgagagtctgcgggacagcaacaaccagccggagtggatggtgctgaccaac
gtgccagtgattccgcccgacctgcggcctctggtgttgttggattcgggcaattttgcc
accagcgacctcaacgacctgtatcggcggatcatcaaccgcaacaaccggctcaagaag
ctggtcgatctcaacgcgcccgacgtgatcatccgcaacgagaagcggatgctccagcag
gcggtggacgcgctgttcgacaacaaccgctgcaagcgtccggtgctgggttcgagcaac
cgcccgcttaagtcgctgaccgacatgatcaaaggcaagcagggccggttccgggaaaac
ctgctgggcaagcgggtggactactcggcccgctcggtgattgtggtgggtcctgatctg
aagctgcaccaatgcggcctgcccaagaagatcgcgctcgaattgttctcgccgttcatc
atccgccggctgcgggaactcaacctggccgacacgatcaagtcggccaagaagatgctg
gagcggcgagtggacgaggtgtgggacatccttgaggaagtcatccgcaaccacccggtg
ctgctcaaccgggccccgacgttgcaccggatggggattcaggcgttcgagccagtgctg
gtggaaggcaacgcgattcggatccacccgttggtgtgcaaagggttcaacgccgacttc
gacggcgaccaaatggcggtccacctgccgttgtcgatcgaagcccaggtcgaggcgatg
accctcatgatgtccaccaacaacatcttcagcccggccaacggcaagccgatcatctcg
ccgacccaagatattgtcatggggtcgtactacctgacggtgcatcgtcccggcgacccc
ggcgagtacaaggaagacgccgccggccgaccaatccagggggtctttagttcgcccacc
gaggtgtttttggccttcagcctgcgcaaggtcggggtccacgcccgcatcaagctccgc
ctgccggcccataagcgactcaagggcgagggcgagaaggaacacaccccaggcaagccg
atctttaccacggtcggccgggtgatctttaacgacatcctccaccccaacatggccttt
tacaatcaggcgctggggcaaaagcaactccaatcgatcatcgccgactgccaccaactc
cttggtcgggccgagacgatcgccctgctggaccggatgaaggaactgggcttccgggaa
tcgacccggtccggcctctccttcgccaccgacgacctcaagaccccgaccgagaaagac
aagttcatcgaggaggccgaaaaacaggtcaccaaggccagcaagaactaccaacgcggc
atcatcaccgagcaggagcggtataaccgcgtgctagacatctggaacgaggtccgtgag
aagatcaccactgcgatgatggaggacctcaagaacgacatccgcaacggcgaggtctac
ctcaaccccatcttcctgatggccgactccggagcgcggggcggcgtcgagcagatccgc
cagctcgccgggatgcgcgggctgatggccaaaccctcgggcaaaatcatcgaaaccccg
atcaaggccaacttccgcgaaggtctgtcggtgctggaatacttctcctcgacccacgga
gcgcgcaaaggtctggccgacaccgcgctgaagacggccgattcgggctacttgacccgc
aaactcgccgacgtggcgcaaaacgtggtcgtcacaatgcgcgactgcggcaccacccag
ggcatcaccaagggggtggtttacaagggcgagaaggtcgaggtcagcctggccgactca
atccggggccgggtcagtcgggtccgggtggttcacccgatcaccgacgaaatcatcgtc
aacgaaaacgaactgatcaccatcgagatggcccgccagctggaagagctgcaaatcgag
aaactccaggttcgcagcccgatgacctgcgaagcgccgctgggggtctgccagctttgc
tacggcatggacctgtccaccggacgcttggtcgaagaggggatggctgtggggatcatc
gccgcccagtcgatcggcgaacccggtacccagctgaccatgcgtaccttccacttcggc
ggcgtggcgaccctggggatcgaagagaaggacatcaagtgcaagcgcgagggattcgtc
aaatacaggaacatcaacgctgtcgagaatgccgatgggcatctgatctcgctgtcacgc
aacggcgaaattcaagtggtggacgccaaaggccgggagctggagaagttcgacgtgccc
gagggggcgatcttgaaggtcgccgacggtgcgttcgtcaccaaggggaccatgctttgc
gagtgggacccgcacaacttcccgattctggcccaggtgggcggtcgtgccttctacgag
gacatccgcgaaggcgagaccatgaaggtcgagaccgaagcctccggtctgatgcgccgc
accatcattgaacacaagggagatctgcacccgcagatcgtcatcaaaggggctgatggt
caaatcatcgaagcccactacattcccgagcgggcctcgatcgaagtggacgacggccag
gagatcaagccgggcactctgctggctaagacgccgcgagcggcagtcggcacccaggac
atcaccggcggtctaccccgggtcaccgagttgttcgaggcgcgtcggcccaaagatccg
gcgatcatcgccgaaatcgacggcgtggtcaccttcctggacgagaagcgtcgcaacaag
cggaccatcatcatccgcaacgaagcctccggcaaggaagtcgaacacctcgtgccccac
ggcaagttcctgcgggttcacggcggcgaccgggtcaaagccggtacagcgctggtggac
ggcccgcaggtgcctcacgatatcctccgcatctcgggcgaggaggaggtccagcgctac
cttctgcgggaaattcaaaacgtctatcgcgctcagcgggtcgagatcgacgacaagcac
ctcgaaatcatctgtgcacagatgctccgcaaggtgcgggtcgatcacggcggcgacacc
ggcttgttgccgggcagcgtgatcgataagttcgagttccgccgcaagaacgaggagctg
cgcgattcggtcaagatcaaagaccccggcgacgcggccgagttgcgcgagggcgaagtg
gtcagccgcgactatgtggacaaggtcaatgccgagatcgaggccaaaggagggcggaag
gtggagtggacccgcccccaaccagcccgagccagtactcagttgcttggcatcaccaaa
gccgcggtccagtccgagagcttcatctcggcggccagcttccaggaaaccaccaaggtc
ttgaccgaggcggccctagcgggcaaggtcgatcgtctggttggcctcaaggagaatgtc
atcctcggccacttggttcctgccgggaccggtttcaagctgcaccaggaagcggaggtc
cgcatccgtcccgaagcgctggagcagctggccgaacgcggtcccggctacgctcgttat
ccccgcgacgacgctcctacccgcgtccgcgaacgcgatcgcgacctagtgggatga
DBGET
integrated database retrieval system
