Ignicoccus pacificus: IPA_03605
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Entry
IPA_03605 CDS
T08506
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
ipc
Ignicoccus pacificus
Brite
KEGG Orthology (KO) [BR:
ipc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipc03016
]
IPA_03605
Enzymes [BR:
ipc01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
IPA_03605
Transfer RNA biogenesis [BR:
ipc03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
IPA_03605
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
TSEN34_N
tRNA_int_end_N2
HTH_52
Motif
Other DBs
NCBI-ProteinID:
UXD21378
UniProt:
A0A977PJZ3
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All DBs
Position
complement(631898..632443)
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AA seq
181 aa
AA seq
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MRMITALLVGDRSIVMDDEGAQELYWKGFFGNPFTTPKPKKKEDVKAPLVLSPIETLYLV
EKGIIEVIDVKSKKKVSLEELWKVWGDEKMKMEYKVYKELRDKGLVVKSGLKFGADFAVY
EFGPGIDHAPFLVDVHSSDEKIDPSEMVRAGRVAHGVRKRFMLAIIKGENVHHIVFKWYL
P
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
gtgagaatgataaccgctcttctagttggagataggtccatagtaatggacgatgagggt
gcacaagaactgtattggaagggcttttttggtaatcccttcaccactccaaagcccaag
aagaaagaagacgttaaggcaccgttggtgctttcccctatagagactctctacttggtt
gaaaagggtatcatcgaggtaattgacgtgaagagtaagaagaaggtgagcctagaggag
ctctggaaggtatggggagatgagaaaatgaagatggagtataaggtgtataaggagctt
agagataagggtctagtagtgaagtcgggattgaagttcggagcggacttcgcagtctat
gaattcggtcccggtatagatcacgcgccatttctagttgacgtacatagctctgatgaa
aagatagacccatctgaaatggttagggctgggagagtggcccacggcgtcaggaagagg
ttcatgcttgcaataatcaaaggggagaacgtgcatcatatcgtttttaagtggtacttg
ccctag
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integrated database retrieval system
