KEGG   Ignicoccus pacificus: IPA_03780
Entry
IPA_03780         CDS       T08506                                 
Name
(GenBank) DNA-binding protein
  KO
K15171  transcription elongation factor SPT4
Organism
ipc  Ignicoccus pacificus
Brite
KEGG Orthology (KO) [BR:ipc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    IPA_03780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipc03021]
    IPA_03780
   03019 Messenger RNA biogenesis [BR:ipc03019]
    IPA_03780
Transcription machinery [BR:ipc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     IPA_03780
  RNA polymerase I system
     IPA_03780
Messenger RNA biogenesis [BR:ipc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     IPA_03780
SSDB
Motif
Pfam: Spt4 UPF0547 DZR Zn_ribbon_15 Zn_Ribbon_1 DZR_2 zf-C4H2 zf-ChsH2 Zn_Ribbon_TF A2L_zn_ribbon HVO_0416 TackOD1 HypA Zn_ribbon_3 Lar_restr_allev DUF4931_N NRDD MTNAP1_ZnF
Other DBs
NCBI-ProteinID: UXD21391
UniProt: A0A977PJ86
LinkDB
Position
653437..653652
AA seq 71 aa
MKRMRKPFKACMDCRALVPRDAEVCPFCGSSNLTENWDGAIIVISEKSELLGELEYLKKP
GRYAVEVAASE
NT seq 216 nt   +upstreamnt  +downstreamnt
atgaagaggatgaggaaacccttcaaggcctgtatggattgcagggcgctggtccccagg
gacgcggaggtgtgtcccttttgcggaagcagcaatctaacggagaactgggatggagca
ataatagtgatatcggagaagtcagagctgctgggagagctggagtacttgaagaagccg
ggaaggtacgcggtagaagtggctgcatcggagtaa

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