Ignicoccus pacificus: IPA_08135
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Entry
IPA_08135 CDS
T08506
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
ipc
Ignicoccus pacificus
Pathway
ipc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPA_08135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipc03019
]
IPA_08135
Messenger RNA biogenesis [BR:
ipc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
IPA_08135
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
IPA_08135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
CheW
Motif
Other DBs
NCBI-ProteinID:
UXD21791
UniProt:
A0A977KBE9
LinkDB
All DBs
Position
1396147..1396875
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AA seq
242 aa
AA seq
DB search
MSGGKSPVPLFKDGKRHDGRGPMDLRPIEMKVGVLNNANGSAWVKFGRTEVIAAAYGPRE
PPKFMSLPDRALLRCRYHMAPFSTDERKNPAPSRREIELSKVIREALETVVLTHLFPRTV
IDVFVEVIQADGGTRTAAITAASLALADAGIPMKDLVAGIAVGKVDGHLVLDIDQIEDNY
GEADMPVAGAVNLDKVVLLQLNGSLTPEEFNKAMYMAWEGIKKVYALQKKALEEKLRKEV
NL
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaggaaagtcgcccgttccattgttcaaggacggaaagagacacgacggaagg
ggtccgatggacctaaggccgatagagatgaaggtgggagtgctcaacaacgccaacggc
tcggcttgggtgaagttcgggaggaccgaggtcatagctgcagcttacggacctagagag
cctcccaagttcatgagcctccccgatagagccttgctcagatgcagataccacatggct
cccttcagcacagacgagaggaagaaccccgccccttctaggagggagatagagctttcc
aaggtgataagggaagctttggagacggtcgttctaactcacttgttccccagaaccgtg
atagatgtgttcgtggaggtcattcaagctgatggaggaactaggaccgccgccatcacc
gccgcctcgctggccctagctgacgccggaatacccatgaaggacctagttgcaggaata
gctgtgggaaaggtagacggccacctagtgctcgacatagatcagatcgaggacaactac
ggagaggctgacatgcctgtggccggagcagttaacttggataaggtggtactactacag
ttgaacggatctcttactcctgaggagtttaacaaggccatgtacatggcctgggagggc
attaagaaggtctatgccctccagaagaaggcgcttgaggagaagcttagaaaggaggtg
aacttgtga
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