Ignicoccus pacificus: IPA_08140
Help
Entry
IPA_08140 CDS
T08506
Name
(GenBank) exosome complex exonuclease
KO
K12589
exosome complex component RRP42
Organism
ipc
Ignicoccus pacificus
Pathway
ipc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPA_08140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipc03019
]
IPA_08140
Messenger RNA biogenesis [BR:
ipc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
IPA_08140
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
IPA_08140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
UXD21792
UniProt:
A0A977KA03
LinkDB
All DBs
Position
1396875..1397702
Genome browser
AA seq
275 aa
AA seq
DB search
MSITPFNVPIVPKLKRETILSLAKRGVRIDKRRLDQFRPISIQLGAAGKAHGSALVSIGN
TKVLAGVKIEPGRPFPDTPEEGVLNVNAELVPLASPEFEPGPPDENAIELARVVDRALRE
SHAIDMSELVLIPGEKVWVVWVDIYVLDHDGNLFDASMLAAMAALMDAKIPNHQVLEDGS
VEILGPGVEPLPIRKKVVSVTLGILGDTFIVDPSLEEEAVADGKIFFAFDDSGNIVGIQK
SGPAWLDFKKVSVAMEIARNRYHNVLAALNKAFQS
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcacaccctttaacgttcctatagttcccaagctgaagagggagaccatactt
tccctagcaaagaggggagtgaggatagacaagaggaggctcgaccagtttaggccaata
agcatccagctgggagctgctgggaaggcacacggaagcgctctggtaagcataggaaac
accaaggtgctggccggagtcaagatagagccgggaaggcccttcccagacactccagaa
gagggggtgctcaacgtaaacgccgagctcgttcccttagcctcccctgagttcgagccc
ggcccaccggatgagaacgccatcgaattggccagggtggtggacagagcccttagagag
agccacgccatagacatgagcgagctggtactgataccgggagagaaggtctgggtggtc
tgggtagacatttacgtgctcgatcacgacggaaacctcttcgacgcctcgatgctggca
gcaatggctgccctcatggacgcaaagatacccaaccaccaagtgctagaagacggaagc
gttgagatcttgggacccggagtagagcctctgccgataaggaagaaggttgtgagcgta
accttaggaatcctcggggacaccttcatagtggacccgagcttggaagaagaagcggta
gctgacggaaagatcttctttgccttcgacgacagcggcaacatagtgggaattcagaag
agcggacctgcttggcttgacttcaagaaggtcagcgtggcaatggaaatcgctaggaac
cgctaccacaacgtcctagcggccctgaacaaggccttccaatcctaa
DBGET
integrated database retrieval system
