Ignicoccus pacificus: IPA_09305
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Entry
IPA_09305 CDS
T08506
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ipc
Ignicoccus pacificus
Brite
KEGG Orthology (KO) [BR:
ipc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipc03016
]
IPA_09305
Enzymes [BR:
ipc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IPA_09305
Transfer RNA biogenesis [BR:
ipc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IPA_09305
Prokaryotic type
tRNA splicing ligases
IPA_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF3783
Motif
Other DBs
NCBI-ProteinID:
UXD21890
UniProt:
A0A977KC38
LinkDB
All DBs
Position
complement(1591960..1593414)
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AA seq
484 aa
AA seq
DB search
MPANIPLKRIGEYEWMIEKGVKPCMRVPAIIFADEYLLEKMKSDRTLDQAANVACLPGIK
RASYVMPDGHQGYGFPIGGVAATAVDENGVISPGGVGYDINCGVRVLRTNLNEEDVRPKL
KDLVYELFRNVPSGLGSRGKVRLSISELDKVLEEGVYWAVERGYGWSEDPEHIEEHGRMV
TADASKVSQRAKMRGAPQLGTLGSGNHFLEIQVVEKIYDPHAAKVMGITHEGQVLVMVHT
GSRGLGHQVASDYLIRMERAMKKYGIRVPDRELASVPWNTPEAQDYFKAMSAAANYAWTN
RQLITHWVRESFKNVFKTDPENLDMHIIYDVAHNIAKFEEHDVDGKRMKLIVHRKGATRA
FPPGHPEIPKDYQSIGQPVLIPGSMGTASYILVGQPTGARTWYSTCHGAGRWLSRAAAIR
TYRPSQVVQELAQKGVVIKAAQARVIAEEAPGAYKDVDKVVKVVHAVGISKLVAKMRPIG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgccagcgaacatacccttaaagagaattggagaatacgagtggatgatagagaaggga
gtaaagccttgtatgagagttcccgcaataatattcgccgacgagtacttgttggagaag
atgaagagtgataggacgttggatcaagcagccaacgtcgcttgtctccccggaataaag
agagcctcctacgtaatgcccgatggtcatcaagggtacggcttccccataggaggagta
gctgccactgctgttgatgagaacggcgttatctctcctggaggagtgggatacgatata
aactgcggcgtcagggtcttgaggaccaacttgaatgaggaagatgttagaccgaagctg
aaggatctagtgtacgagcttttcaggaacgtgccatctggattgggtagtaggggtaag
gtgaggctgagcataagcgagttggataaggtgttggaggaaggagtgtactgggcggtt
gagagaggttacggctggagcgaggaccccgaacacattgaggagcatggaaggatggtt
accgccgatgccagtaaggtaagtcaaagagctaagatgagaggagctccccagctaggc
acccttggaagtggtaaccacttcctcgagatacaagtcgttgagaagatctatgatccg
catgccgccaaggtaatgggtataactcacgagggtcaggtgttagtaatggttcatact
ggttccagaggactgggtcatcaagtggctagtgactatttgataaggatggagagggca
atgaagaagtatggaataagggttcccgatagggaactcgcctcagttccttggaacacc
ccggaggcacaagattacttcaaggccatgagtgctgctgccaactacgcgtggaccaac
agacaactaattactcattgggttagggagagcttcaagaacgtattcaagaccgatccg
gagaacttggatatgcacataatctatgacgtagcccacaacatcgctaagttcgaggag
catgacgtcgatggtaagaggatgaagttgatagttcatagaaagggagccaccagagcc
ttcccaccaggacaccctgagatacccaaggactaccagagcatagggcagccggtgcta
atacccggatccatgggtacagctagctacatcttggtaggacaacccaccggagcgagg
acctggtactctacttgccacggtgccggtagatggctcagcagagcggcagcgataagg
acctataggccaagccaagtggtccaagagctagctcagaagggagtggtaatcaaggca
gctcaagccagagtcatagccgaagaggctccgggagcctacaaggatgtggacaaggta
gtaaaggtcgttcatgctgttggcataagcaaactcgtcgctaagatgagacccataggt
gtggtgaagggttga
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