KEGG   Ignicoccus pacificus: IPA_09435
Entry
IPA_09435         CDS       T08506                                 
Name
(GenBank) endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
ipc  Ignicoccus pacificus
Pathway
ipc03030  DNA replication
ipc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ipc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IPA_09435
   03410 Base excision repair
    IPA_09435
   03450 Non-homologous end-joining
    IPA_09435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipc03032]
    IPA_09435
   03400 DNA repair and recombination proteins [BR:ipc03400]
    IPA_09435
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipc04147]
    IPA_09435
DNA replication proteins [BR:ipc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    IPA_09435
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     IPA_09435
DNA repair and recombination proteins [BR:ipc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     IPA_09435
Exosome [BR:ipc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   IPA_09435
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: UXD21907
UniProt: A0A977KA72
LinkDB
Position
complement(1617424..1618491)
AA seq 355 aa
MGKNPLGVSALREIIPPQCKREHSLRALSGKSIALDAYNSLYQFLAAIRGEDGRPLMDSK
GRVTSHLSGLFYRTINMLEHGIRIAYVFDGKPPRLKSREIERRIEIKEKAKEKYEEAIRK
GEVEEARKYAQMSARLSKEMVEEAKKLLDAMGVPWVQAPSEGEAQAAYMAQKGSVWASGS
QDYDSLLFGSPRLVRNLTITGRRKLPGKREYIVIEPEEITLQCVLEKLGITREQLIDIAV
LIGTDFNEGVKGVGPKRALHLVKTYKDLERILRSLGVRDVEPFLAAKEIFLHPEVTDNYK
LEWREPDPQKIYEILVVEHDFNEERVKRAIERLMKAWREKIRYRQVGLDMFFKKR
NT seq 1068 nt   +upstreamnt  +downstreamnt
atggggaagaatcccttgggtgtttctgcattaagagaaataatccctcctcaatgtaag
agagagcatagcctaagggcgctctctggaaagagtatagctttagacgcttacaattct
ctatatcagttcttagctgctattagaggagaggatggacgacccttaatggattctaag
gggagagtgacgagtcacctctcggggctcttttacagaacgataaatatgctggaacat
ggaataagaattgcttatgtctttgatggtaagccaccaagactaaaatcgagagagatc
gaaaggagaatagagatcaaggaaaaggcaaaggaaaaatacgaagaagcaattagaaag
ggcgaggtagaggaggcgaggaagtacgctcagatgagtgcgagattgagcaaggaaatg
gtagaggaagcgaagaaactcctcgatgccatgggtgttccttgggtgcaagctcctagc
gaaggagaggctcaagcggcgtacatggctcagaaaggctcagtctgggctagcggtagc
caagattatgattctcttcttttcggaagtcctcgtttggttcgtaaccttacaataacg
ggaagaagaaagcttccaggtaaaagggaatatattgtaatagaacccgaagagataacg
ctccagtgtgtattagaaaaactaggcatcacaagagaacaattgatagacatcgctgtg
ttaattggaactgatttcaatgaaggggtgaaaggagtaggcccgaagagagcccttcat
cttgtaaagacttacaaagacctcgagagaatattgagaagtttaggtgtaagggacgta
gaacccttcctagctgcaaaggagatattcttacaccccgaggttacggataactacaag
ctagaatggagggagccggatcctcaaaagatatacgaaatattagtggtagaacatgat
ttcaatgaagagagagtgaagagagcaatagaaaggctgatgaaggcttggagagagaaa
atacggtatagacaagtgggcctcgacatgttctttaaaaagcgctaa

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