Idiomarina piscisalsi: CEW91_03980
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Entry
CEW91_03980 CDS
T04931
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ipi
Idiomarina piscisalsi
Brite
KEGG Orthology (KO) [BR:
ipi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipi03016
]
CEW91_03980 (rnd)
Enzymes [BR:
ipi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CEW91_03980 (rnd)
Transfer RNA biogenesis [BR:
ipi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CEW91_03980 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
ASG65356
LinkDB
All DBs
Position
827115..828284
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AA seq
389 aa
AA seq
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MTQLELPESVRQYRLISSTDELADFCSKARQTGWFAIDSEFVRERTFYANLGLLQMHAGG
DTVIVDPLADINLAPVWSLISSDSIETVLHAGGEDIELFFYESGGAQPSRVFDSQIAAGF
CGIGESMGYARLVSDLFDNVELDKSLSRTNWLKRPLSPEQLDYAAADASYLAVMYPYLKA
LCEEKGCLDIVYEESVLQVRKRTTRIPDDLLYLQVGNAWQLNDEQLAVLQELASWRFNKA
RKKNIPLGFIAKDGALLELARRKPKSQSDLNHIRDLPPLSKKYSGNEMITVIRKAEEQAT
SKSLKPLSRLDDMPGYKETFKAIKQKVTELAESLDVPVSLVASRKQINDLINFFWQYSPQ
QQERLPQPDLLTGWRNAAIGAELRAIVSL
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgacgcagcttgaacttccggagtcggtgcgtcagtaccggctcatctcttctaccgat
gaattagccgatttctgctctaaagctcgtcagacgggttggtttgcaatcgactctgag
tttgtgcgagaacggactttttacgcgaatcttggactgttacagatgcatgctggcggt
gacacggttatcgtggatccgctggcggatattaatttagcgccagtatggtcgctcatt
tcttcggatagcattgaaaccgtcttgcatgccggtggcgaagacattgagctgtttttc
tatgaaagtggcggtgctcaaccaagccgtgtgtttgatagccaaatagctgccgggttt
tgtggtattggtgagtccatgggctatgctcgcttagtcagcgatctatttgataatgtg
gaactcgacaaaagcctctcccgcacaaactggttaaaacggcctttaagccctgaacaa
ctggattacgctgccgctgatgccagctatctggctgttatgtatccttatttgaaagca
ctttgcgaagaaaagggctgtttggatatcgtctacgaagaatcggtacttcaggttcgt
aagcgaacgactcgcattcctgacgatctcttatatttgcaagtgggtaatgcctggcaa
ctcaatgatgagcagttagcggttttacaagagttggccagttggcgattcaacaaggct
agaaagaaaaacattccattaggctttatcgctaaagacggcgcattgttagaactggcc
agacgcaaacccaaatcacaaagcgatctaaatcacattcgtgacttaccgccgttatca
aaaaagtattccggcaatgaaatgattacagtcattagaaaagccgaagagcaggcgact
tctaaatcgctgaagcccttaagccgattggacgatatgccgggctacaaggagacgttt
aaagcgataaagcaaaaagtcaccgagctcgctgagtcacttgatgtgcctgtatcatta
gtggcatcacgaaaacaaataaatgacctgattaattttttctggcaatactcgccgcag
caacaggaacgtctgccgcaaccagacttactgacgggttggcgaaatgcggcaattggg
gcagaattacgggctattgtttcgttatag
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