Idiomarina piscisalsi: CEW91_04985
Help
Entry
CEW91_04985 CDS
T04931
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ipi
Idiomarina piscisalsi
Pathway
ipi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEW91_04985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipi03019
]
CEW91_04985
Enzymes [BR:
ipi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEW91_04985
Messenger RNA biogenesis [BR:
ipi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEW91_04985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Gag_p24
P-loop_SecA
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
ASG65524
UniProt:
A0ABM6LSK7
LinkDB
All DBs
Position
complement(1027038..1028291)
Genome browser
AA seq
417 aa
AA seq
DB search
MSTEQNQSSFQSLGLNDNILRAVNECGYTTPTPIQEQAIPTVMKGHDLLAAAQTGTGKTA
GFTLPLLHNLSLTKTEGKPVIRALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGI
NPQINALRRGVDILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMK
LIPEQRQTLLFSATFSKEIKALAQQFVHQPKLVEVARQNATADTIEQRVYPVDKKRKREL
LSYLIGSRNWRQVLVFTRTKHGANRLATQLSDDGLPAMAIHGNKSQGARTKALAQFKAGK
LRVLVATDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHK
LLRDIEKLTKNEIPKEVVPGFEPDPSIKPEPIQKPRGSRPNNSRRAPRQKRPATRRS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaacaaaatcagagctcgttccagtcactaggactgaacgacaatatctta
cgagctgtaaatgaatgcggttataccacccctaccccaattcaagagcaagccattccg
accgtaatgaaaggtcatgacttactggcagcggcacaaaccggaaccgggaaaacagca
ggtttcacgcttcctttattgcataacttgtctttgacgaagacagaaggtaagcctgtt
attcgagcgctaatattaacaccgacacgtgagttagcagctcaggttgaggataacctc
aacacgtacgcaaaatacacgggcctcaaatcgctggtcattttcggtggcgttggtatc
aacccacaaattaacgcgttacgtcgaggtgtcgatatcttagttgcgacaccaggacga
ctgcttgatcacagccgtcaaggaacggtcgacttgagcaagattgatgtattgatatta
gatgaagccgatcgcatgctcgacatgggttttattcatgacattaagaaagtcatgaag
ctgattcctgaacaacgtcagacactgctgttctcggcgacgttttctaaagaaattaaa
gcgctggctcagcagttcgtgcaccaacctaaactggtggaagttgctcgacaaaatgcc
accgctgacacaattgagcaacgcgtttatccggttgataagaaacgcaaacgtgagtta
ctaagctacctgattggcagcagaaactggcggcaagtattagtctttacccgtaccaag
cacggggccaatcgtttggcgactcaacttagcgacgacggtttaccagcaatggctatt
cacggcaataaaagccagggcgccagaaccaaagctttagcgcagtttaaagcaggaaag
ttacgtgttttagtcgcaaccgacattgcggcacgtggcattgatatcgatgaattaccg
cacgttatcaatttcgaattaccgcaggttgccgaagactacgtacaccgaattggtcga
accgggcgtgccggcagtgagggtgaagcggcttctttggtctgtgtggacgagcacaag
ttgctgcgcgacattgaaaagctgaccaaaaatgagatacccaaagaagtggttccgggc
tttgagcctgatccaagcataaaaccagagcctatccaaaaacccagaggtagccgacca
aataattcgcgccgcgcaccacgacaaaaacgtccggcgacacggcgctcataa
DBGET
integrated database retrieval system
