Ilyobacter polytropus: Ilyop_0180
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Entry
Ilyop_0180 CDS
T01337
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ipo
Ilyobacter polytropus
Pathway
ipo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ipo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ilyop_0180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipo03021
]
Ilyop_0180
03400 DNA repair and recombination proteins [BR:
ipo03400
]
Ilyop_0180
Enzymes [BR:
ipo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ilyop_0180
Transcription machinery [BR:
ipo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ilyop_0180
DNA repair and recombination proteins [BR:
ipo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ilyop_0180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Biotin_lipoyl
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
ADO81969
UniProt:
E3H7L5
LinkDB
All DBs
Position
202784..206728
Genome browser
AA seq
1314 aa
AA seq
DB search
MGIKNFEKIRIRLASPEKIQDWSFGEVTKPETINYRTLNPEMDGLFCEKIFGPTKDWECA
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHINLAAPVSHIWYSKGTPNKMSLVLGIS
PKELESVLYFARYIVISTGDTNLKEVKILTEREYKLYRQQHGKSFEAQMGAEAILKLLQK
INLEELQVELEKELEDVTSSQKRKKIVKRLKIVRDFSESGNKPEWMILKNVPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMDQCGIPKK
MALELYKPFIMRELVKRELASNIKTAKKLVEDADDKVWDVIEDVIQDHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCAAFNADFDGDQMAVHLMLSPEAIMEAKLLMLAPNNII
SPANGEPVAVPSQDMVMGCYYMTKDKPGAKGEGMVFSSIDKVLTAYQLGMVETHAIVKVR
INSELVESTPGRVLFNEMLPVENRMYNVTFGKGPLKKLIAKLYEMHGFTITAELINDIKN
FGYHYATFAGITVGIEDLEIPESKKSILEEADNMVDQIEQDYRDGKIINEERYRKTVAVW
SKATDDVTKAMMENLDQFNPVYMMANSGARGSIAQMRQLGAMRGLMADTQGRIIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNSEDCGTHEGIE
VAELVSEGNVIEKLSERLNGRVLVEDVVHEGELVASRNTIIDKELINKIEELEIKKVKIR
SPLTCSLEKGVCKKCYGMDLATHKEILLGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAMA
SAAATSIKAENSGRIAFREVKILETEDSDDKVVVSQSAKLIIGNYDYEIPSGSILKVEEG
QMVEAGDTLVVFDPYNIPIIADNDGVAEYRELYVKESYDEKYDVTEYQAIKPVESGDINP
RIILFDDDGNKVGVCYIPFGAFLMVKEGDKVKKGQIVAKIIPEGAGTKDITGGLPRVQEL
FEARNPKGKATLSEIDGKVEITGKKKKGMRVIIIKSTSDSDLFKEYLVPVGEHLVVTDGM
LVKSGDKITDGAISPHDVLSIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFK
KVRIVDSGSSLFLEDEVVEKRLMDLENEVLRAAGKREIQYQPIIQGITKAAVNTGSFISA
ASFQETTKVLSNAAIEGKEDYLEGLKENVIIGKMIPAGTGFTSYKTIEPKKLQD
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgggaattaaaaatttcgaaaaaatcaggattagactagcatctccggaaaagattcaa
gattggtcttttggagaagtaactaaaccggaaacaattaactatagaacacttaatcct
gaaatggatggtcttttctgtgaaaaaatatttggtccaactaaggactgggaatgcgct
tgtggaaaatacaaaagaatgagatataaaggtcttgtttgtgaaaagtgtggagtagaa
gtaacaagagcaaaagtcagaagagagagaatggggcatattaatcttgccgctccagtt
tctcacatctggtactctaaaggtactccaaacaagatgtctcttgttcttgggatttcc
ccaaaagaacttgaatcagttctttattttgcaagatatatcgtaatatctacaggtgat
acgaatcttaaagaggtaaagattttaactgagagagaatacaagctatacagacagcaa
cacggaaaaagttttgaagctcaaatgggtgcagaagctattcttaaattgctacaaaag
ataaatcttgaagaacttcaagtagaacttgaaaaagagcttgaagatgtaacttcttct
caaaagagaaagaagatagtaaaaagacttaaaatagtaagagacttcagtgagtcaggt
aataaacctgaatggatgatactaaaaaatgttccagtgataccagctgaccttagacca
atggtgcagctagacggtggaagatttgcaacttcagatctgaatgacctttatagaaga
gtaataaacagaaacaacagattgaaaaaacttttagaaataaaagcacctgaaatcgtt
gtaaaaaatgaaaaaagaatgcttcaagaagctgtggatgcccttatagataacggaaga
agaggaaagcctgtagttgcacaaaacaacagagaacttaaatctctttctgatatgtta
aaaggtaagcaaggtagatttagacagaaccttctcggtaaaagggtagactattctgct
agatcggttatcgttgtaggtccgtccctaaagatggatcagtgcggaatccctaaaaaa
atggcccttgaactatacaagccttttataatgagagaacttgtaaaaagagagcttgct
tcaaatataaagacagctaaaaaacttgtagaagatgcagatgataaagtatgggatgta
attgaggatgtaatccaggatcacccagtacttttaaacagagcacctactcttcacaga
ctttcaatacaggctttccaacctgttcttatagaaggaaaggctatcagacttcaccca
ttggtttgtgctgcatttaatgccgatttcgatggtgaccagatggcagtacacttgatg
ctttcacctgaggcgataatggaagcaaaacttctaatgcttgcaccaaataacattata
tctcctgcaaatggagaaccggtagctgtaccttctcaagatatggttatgggatgttat
tatatgacaaaagataaacctggagctaaaggtgaagggatggttttttcgagcatagat
aaagttttgactgcttatcaactgggaatggttgaaactcatgcaattgtaaaagtaagg
ataaactctgagcttgttgaatctactccaggtagagtacttttcaatgagatgcttcct
gtggaaaacagaatgtataatgttactttcggtaagggacctcttaagaagcttattgca
aaactttatgagatgcatggatttactataacggcagaacttataaatgacattaaaaac
ttcggatatcattacgctacgtttgctggaataactgtaggtatagaggatcttgaaatt
cctgagtctaaaaagtcgattcttgaagaggctgacaacatggtagatcaaatcgaacag
gattacagagacggtaagataataaacgaagaaagatatagaaaaacagtagcagtatgg
tcaaaagcaactgatgatgtaacaaaggcaatgatggaaaacctagaccaatttaacccg
gtatatatgatggccaactcaggagcaagaggatctatcgcacagatgagacaacttgga
gccatgagaggactaatggcagatacacagggaagaatcatagaggtacctatcaaagca
aacttccgtgagggtctaactgtattagaattcttcatgtcatctcacggagctagaaaa
ggtctggcagatacagcactgagaactgccgactcgggatacctaacaagaagacttgta
gatatttcgcatgaagttatagtaaactctgaagactgcggaacacacgagggaatagaa
gtagcagagcttgtatctgaaggaaatgtaatcgaaaaactttcagaaagactgaacgga
agagtccttgtagaagatgtagtacatgagggggagctagtagcctctagaaataccatt
atagataaagaacttataaataaaatcgaagagctagaaattaaaaaagtcaagataaga
tcaccacttacatgtagccttgaaaaaggagtttgtaagaagtgttatggtatggactta
gcaactcataaagagatacttttaggagaagctgtaggagtaatagcggcacaatctatc
ggagaacctggaactcagcttacaatgagaactttccatacaggtggagttgccatggcc
tcagctgcagcaacaagcataaaggctgaaaacagtggtagaatagcatttagagaagta
aaaatacttgaaactgaagacagtgatgataaagttgtagtttctcagtcagctaagctg
ataataggaaactatgattatgagatcccttctggttcgattcttaaagtagaagaggga
cagatggtagaagcgggggataccctagtggtatttgacccttataatatacctataata
gctgacaatgatggtgtagcagaatatagagagctatatgtaaaagagagttatgacgaa
aagtatgacgtaacagagtatcaggcaataaaaccggtagaatctggagatattaaccct
agaataatactctttgatgacgatgggaataaagtcggagtttgttacataccattcgga
gccttcttaatggttaaagaaggagacaaagttaaaaaaggtcaaatcgtggcaaaaatc
attcctgagggagccggaacaaaggatatcactggaggtcttccgagagttcaagaactt
tttgaagctagaaatccaaaaggaaaggccactctttctgagatagacggtaaggtagag
attaccggtaaaaagaaaaaaggtatgagagtaatcataataaaatcaactagtgacagt
gacttattcaaagaatatcttgttcctgtaggggaacaccttgttgttacagatggtatg
cttgtaaaatctggagataagatcacagatggagctatttctccacatgacgtactttct
ataaaaggtcttgttgcggcagagcagtttatactagagtctgttcagcaagtatataga
gatcaaggggtaacggtaaatgataaacatatagagattatcgttaagcagatgtttaag
aaagtcagaatagtagattctggttcatcacttttcttagaagatgaagttgtagagaag
aggttaatggatcttgaaaatgaagtgttaagagcagctggtaaacgtgagatacagtat
caaccgattatccagggaataactaaagcagcagtaaatactggaagctttatttctgcg
gcatcattccaagagacgacaaaagtactttctaacgcagcaatcgaaggaaaagaagac
tatttagaaggtcttaaagaaaatgtaattataggaaaaatgattcctgctggaacagga
ttcacttcttataagacgatagaacctaagaaacttcaagactaa
DBGET
integrated database retrieval system
