Candidatus Improbicoccus pseudotrichonymphae: CfP315_0033
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Entry
CfP315_0033 CDS
T09760
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ips
Candidatus Improbicoccus pseudotrichonymphae
Pathway
ips03420
Nucleotide excision repair
ips03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ips00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CfP315_0033
03430 Mismatch repair
CfP315_0033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ips03400
]
CfP315_0033
Enzymes [BR:
ips01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CfP315_0033
DNA repair and recombination proteins [BR:
ips03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CfP315_0033
MMR (mismatch excision repair)
Other MMR factors
CfP315_0033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_11
PhoH
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
BED91545
UniProt:
A0AA48L0L8
LinkDB
All DBs
Position
38750..41152
Genome browser
AA seq
800 aa
AA seq
DB search
MDLVLEYRNLKRNFLESEFSHLNKEQKEAVFRVKGQVMVVAGAGSGKTTVIINRILNMLS
YGNLYLDESVPKGLNHKLIYKMENVFEDKEKIEEIKEIEIDKINPENILAITFTNKSAKE
LQIRLEAKMGKQAKDVLASTFHSFCVRILRQHAEKIGFSNDFTIYDTEDTRKMIKECQRD
LGIDDKVFPIKNNMSAISKAKDELVSHEDFKERHQTDFKFLQVSQIYEMYQTRIKYANAM
DFDDLIFNTVLLFNSKPEVLKFYQDKFKYVMVDEYQDTNYAQHVLVSKLIGKNGNLCIVG
DDDQSIYKFRGAVVENMLDFEKQYENAHVIRLEQNYRSTKNILIAANSIISNNSGRKEKV
LWTDNPKGNKIKLHTAFSEHDEVNVIVNEIKKRISLGANYSDFAVLYRMSSQSNVIERIF
SKSGIPYKMLGGVRFFERKEVKDLISYFNVINNTGDEIRLRRIINRPKRSMGDRTINLIT
SLARENNKTMYDVMKDFQSYPDLNRCCVKITEFLNVMESLIKSYKKGSSLVDLYHEILDR
TKYIDFLQQENDEVDNRVSNIKELASAVARYEKESENPSLSGFLEEVSLEPDKNVDGNKK
NATGEVVLATIHASKGLEFPVVFLPGFEEEIFPGIHCNFQPEDVEEERRLAYVAATRAKN
ELFILCATSRMIFGSTSHNRPSRFLSEIPEEIIVRTKSQEWTKVENEEKTSSSYDIRVKS
VISARNFGVASNSIISQNMEDLKRDVFSPGEDIIHEVLGRGKIISVVPKEMDSLLEIDFE
KFGTKRIFSRFAKLRRESLR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
ttggatttggttttagaatatagaaatttaaaaaggaattttttggaatctgaatttagt
catttgaacaaagaacagaaagaggctgttttccgtgtaaaaggtcaggttatggttgta
gccggggctggaagcggtaaaacaacggtgataattaatcgtattttaaatatgctttcg
tacggtaatttgtatctggatgaaagtgtacctaagggtttaaatcataaattaatatat
aagatggaaaatgttttcgaggataaggaaaaaatcgaagaaattaaagaaatcgaaatc
gataagataaatcctgaaaatattttggccataacgtttacgaacaaatccgctaaagaa
cttcagataagactcgaagcaaaaatgggcaaacaagcaaaagacgttttagcaagtacg
tttcattctttttgtgtaagaattttaagacaacatgcggaaaaaattggtttttctaat
gatttcacaatatatgacacggaagacactcgaaaaatgataaaagaatgtcagagagat
ttgggaatagacgataaagtatttcccattaaaaataatatgagtgcaatttcaaaagca
aaggatgagttggtttcacatgaggacttcaaagaaaggcatcagactgattttaaattc
ttgcaagtttctcaaatttatgaaatgtatcaaactcgtataaaatatgccaatgctatg
gattttgatgacctaatttttaatactgtgttgcttttcaacagtaaaccggaggttttg
aaattctatcaggataaattcaagtatgtaatggtcgacgaatatcaagatacaaattat
gcccagcacgttcttgtgagtaaattaataggcaaaaacggcaatctttgtatagtcggt
gatgatgatcaaagcatatacaagtttagaggcgcagttgtagaaaacatgcttgacttt
gaaaaacaatacgaaaatgcacatgttatcaggctagagcaaaattatcgttctaccaaa
aacatacttatcgccgcaaattctataatatccaataattcagggagaaaagaaaaggta
ctttggaccgataatcctaagggtaacaaaattaagctccacacagctttcagtgaacat
gatgaagtcaatgtcatcgttaacgagattaaaaagcgaatatctctcggcgcgaattat
tcagattttgcagttttgtatagaatgagctcacaatcgaatgttattgagcggatattt
tccaaaagcggaattccttataagatgttgggtggagttaggttttttgaaagaaaagaa
gtgaaagatttaatttcatatttcaacgtgatcaataacacaggcgatgaaattagattg
agacgtataataaatcgcccaaagcgttccatgggtgatcgtaccataaatttgatcact
tctttagcacgtgaaaataacaaaactatgtacgatgtgatgaaagattttcagtcatat
ccggatttaaacaggtgttgtgttaaaataacggaatttttgaatgttatggaatctttg
attaaaagttataaaaaaggaagttcattggtagatttgtatcatgaaattctggataga
acgaaatatattgattttttacaacaggaaaatgatgaagtagataatagggtttcaaat
attaaagagttggcaagtgcggtagctaggtatgagaaagaaagtgaaaatccgtcgttg
tcgggatttttggaagaggtatcccttgaaccggataaaaacgttgatggtaacaaaaaa
aatgcaaccggagaggtggttttagcaaccatacatgcatcaaaaggtcttgaatttccg
gtggtctttttaccgggatttgaagaagaaatcttcccggggattcattgcaattttcaa
ccggaagacgtggaagaagagcgtcgccttgcctatgttgcggcaacaagagctaaaaac
gaactatttattttgtgtgcaacaagtaggatgattttcgggagcacatctcacaacaga
ccttcgcgatttttgagcgaaattcccgaagaaataatcgtcagaactaaatcgcaagag
tggactaaagttgaaaatgaagaaaagacatcttcttcatatgatataagggttaaatct
gttataagtgccagaaatttcggtgttgcttctaattctataatttctcaaaatatggaa
gatcttaaaagagacgtcttttctcccggcgaggacataattcacgaagttttagggcgc
ggaaagataatttcagtcgtcccgaaagagatggattctttgctcgaaattgattttgaa
aaattcggcacaaagagaattttttccagatttgcgaaattaagaagagaatcgctccgg
tag
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