Candidatus Improbicoccus pseudotrichonymphae: CfP315_0123
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Entry
CfP315_0123 CDS
T09760
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ips
Candidatus Improbicoccus pseudotrichonymphae
Pathway
ips03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ips00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CfP315_0123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ips03021
]
CfP315_0123
03400 DNA repair and recombination proteins [BR:
ips03400
]
CfP315_0123
Enzymes [BR:
ips01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CfP315_0123
Transcription machinery [BR:
ips03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CfP315_0123
DNA repair and recombination proteins [BR:
ips03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CfP315_0123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_5
GP17
Motif
Other DBs
NCBI-ProteinID:
BED91620
UniProt:
A0AA48L0N6
LinkDB
All DBs
Position
124121..125095
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AA seq
324 aa
AA seq
DB search
MSGEMPKIKVLEESENGEFAKLEIEPLARGFGNSLGNSLRRVLLSVLPGVAPYSVKINGV
MHEFSTVPGVKEDVTDLILNIKGIIAKFEGVDKKTVLLKVNGPTNVTAGMIEQDAEFEII
NKDLHIATLDEGHSLDMELTFNSGVGYVSAEQNRSFARDFGLGTIAVDSIYTPVKKVNIY
VSNTRVGRFIDFDKLTIEIWTNEVLSAKEAVSLAALKLIKHYELFSSLSDLSPEISEVLQ
IDIPKEDIEDKSIDDMGLSVRTHNSLRRAGIQTLREIIAMPIGGISKIRNLGKKSFDELM
FKLQEYGYDLPTDSSLTPFLSIKN
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggaaatgcctaaaataaaagtattggaagaatctgaaaatggcgaattcgca
aaattggaaatcgaaccgctcgcaaggggttttggtaacagtttgggaaatagtttgagg
cgtgttttgttgtcggttttgccaggggtggcgccgtattctgtcaaaataaacggtgta
atgcatgaattttctacagttccgggtgtcaaagaagatgtaactgatttgatattaaac
ataaagggtataatcgccaaatttgaaggtgtggataaaaaaacggttttgttgaaagtt
aatggtccaacaaatgttactgccgggatgattgagcaagacgcggaatttgagattatt
aataaagatttgcacatcgcaactttggatgaaggtcatagtttagatatggagttaact
tttaattccggcgttggttatgtttcggcagaacaaaatcgttcttttgccagagatttt
ggtttgggaaccatcgctgtagattctatttacactccggttaaaaaagttaatatatat
gttagtaacacaagagttggcagatttatcgattttgataaattgacgattgaaatatgg
accaatgaagttttgagtgcgaaagaagccgtaagtctagctgctttgaaactgattaag
cattatgaacttttttcttctttgtcagatttgtcgcctgaaatttctgaagttttacaa
atcgatattccgaaagaggatatcgaagataaaagcatagacgacatgggattatcggtt
agaacgcataattcactcagacgtgccggcattcaaactctaagggaaattattgctatg
ccaattggggggatatcaaaaataagaaatttgggtaagaagtcttttgatgagcttatg
tttaaattacaagagtatggttatgatcttcctacagattcttcacttactccatttctt
tccattaaaaattaa
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