Candidatus Improbicoccus pseudotrichonymphae: CfP315_0222
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Entry
CfP315_0222 CDS
T09760
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ips
Candidatus Improbicoccus pseudotrichonymphae
Brite
KEGG Orthology (KO) [BR:
ips00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ips03400
]
CfP315_0222
Enzymes [BR:
ips01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CfP315_0222
DNA repair and recombination proteins [BR:
ips03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CfP315_0222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PDDEXK_1
DEAD
AAA_22
AAA_16
AAA_11
INTAP
Motif
Other DBs
NCBI-ProteinID:
BED91707
UniProt:
A0AA48KYC0
LinkDB
All DBs
Position
complement(217916..221434)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKKWENNQLKAINHSDGFMVVSASAGSGKTSVIVERIFRLINSEKIDIDKLLIVTFTVSA
AEEIKNRILDRILEELNENPFNKNLLRQKFLLNFAQIGTIDSFCNQILKENFEKLNISPN
FRIADEKEMLLIEETAMNLTLEKIYSKEIKNNLDIINKKTEIIETIEFLIDEKNDDKLIE
IILKLYKFNNNFIDDGFFFENNKKNYQEIINLKSENLEDFLNTNIGRFLKKILNENLDVV
IVLLEICANLSANDENIKKAYLEKLNFDLENIKKIKFNLKKDFLYFSFSRLNPAKSVNEH
LKQKIIFSRGEAKKIFNDLLEYFSFFEQKKEDLRKISSIIGNIFNFFKIFKEELKKIKQS
KNIIDFNDLECFSLKILQNNGKPSKTAAELSERFEEIIVDEYQDVNHLQDRIFNLISKNK
KNLFIVGDVKQSIYSFRRSTPEIFINYLNVCEKKIILSENFRSKNKILQEINYIFQNLMT
KKTSMIDYKHNHEISSCINNYDIDNFYFKINIIDLTNADEIEDKNAVEAEFISEFIRNSM
RKEFIYEDNKKRKITYNDFCILLRNANKKIKSHLDILNKNSIPVKSYALDNFFENEEIRI
IVSLLKIINNPLDNMEITYLLTCPLFGFSLEEILKIRQEHNEDFIYFEIKKESFKNKDEI
EKKCKLFLDKIDHYREKSFVLFLEELIEYIIDDSLLFAFCYSKPNSNEKILNIEKFSVLA
KEFQDTTKCLSSFVDYIQNLKDKKIKINLNKEDLNLDYVKIISIHKSKGLEFPICILAGC
SNEFLSDYDEVIMDSKIGMGIKLKNENGTVKFQNIIRKICEKKLNQEKISEEIRLLYVAL
TRAKENLTIMITEKDLKRKIENIIKYYVIYKECENKLIEDFYFKNCKSFSDWILYLIIKK
TDSDNYENFIKKVSLDKNIKILSYKEVNIFENNSKNIEKYEMLEENINFSDYFSEKMKKR
FDFIYKNSEEKIPLKISASKLASKNNWQDFASVFPSFINDKFSQTEIGIAIHTLLSISNF
DILLKNYDYHLKLLFSEKKISERQFKILVQELNKLRIKKFLIGELGQRLMQSKKIFREYQ
FSILENFDKNNKPTMIQGEIDCVFQENNEFIIIDYKTDKIFHIDELLNKYANQLQIYKKA
FEKCEKTKVNELIIYSFHLNSFINIDKKYQNF
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatgggaaaataatcaattaaaagcaattaatcattctgatggttttatggtt
gtttccgcttcagcaggctcaggtaagacctcagttattgttgaaagaatttttagatta
ataaactcagaaaaaatcgatatagacaagctgttgatagttactttcacagtttctgct
gcagaagaaataaaaaacagaattttggatcgtattctggaagaactgaatgaaaatcct
tttaataaaaatctattacgccaaaaatttttattaaattttgctcaaattggtacaatt
gacagtttttgtaatcaaatattaaaagaaaacttcgaaaagttaaatatttctcctaat
tttagaatcgccgatgaaaaagaaatgcttctaatcgaagaaactgcaatgaatttaacc
ttggaaaaaatttattcaaaagaaataaaaaacaatttggatataattaacaaaaaaaca
gaaattattgaaacaatagagtttttaatagatgaaaaaaatgatgataaattaattgaa
ataatattaaaattatataaatttaacaataattttatcgatgacgggttttttttcgaa
aataacaaaaaaaattatcaagaaattattaatttaaaaagcgaaaatttggaagatttt
ttaaatacgaacataggacgttttttaaaaaaaatattaaacgaaaatctcgatgttgta
atagtcttgttggaaatttgtgctaatttatctgcaaatgatgaaaatataaaaaaagct
tatttagaaaaattgaattttgatttagaaaatatcaaaaaaataaaatttaatttaaaa
aaagattttctttatttttcgttttctagattgaatccggccaaaagtgttaatgaacat
ttaaagcaaaaaataattttttcgcgcggagaagctaaaaaaatcttcaacgatttacta
gaatacttttcttttttcgagcagaaaaaagaagatcttagaaaaatatcatcgataata
ggtaatatatttaatttttttaaaattttcaaagaagaattgaaaaaaataaaacaaagt
aaaaatataattgatttcaacgatctggaatgtttttcactaaaaattttacaaaataat
ggcaaaccaagcaaaacagcggccgagctttccgaaagatttgaggagattattgtggac
gaatatcaggacgtgaatcatctacaagacagaatttttaatttgatatcaaaaaataag
aaaaatttatttatagtaggagacgtcaaacaaagtatatacagcttccgtagatcgacc
cccgaaatatttattaattatttaaacgtttgtgaaaaaaagataattttgagcgaaaat
ttcagaagtaaaaataaaatcctacaagaaataaattatatttttcaaaacctaatgacg
aaaaaaacatcaatgattgattataaacacaatcatgaaatctcgtcctgcataaacaat
tacgatattgataatttttatttcaaaattaatattatagatttaacgaatgcagatgaa
atagaagacaaaaatgcagtcgaagctgagtttatatctgaatttatacgtaacagtatg
cgaaaagaatttatttatgaagataacaagaaacgcaaaataacctataacgacttttgt
attttgttaagaaatgccaacaaaaagatcaaatcacatttggatattttaaataaaaat
tccataccagtaaaatcatatgctctggataattttttcgaaaacgaagaaataagaata
attgtatctttgcttaaaataataaacaatccacttgacaatatggaaattacttatttg
ctcacatgcccgctttttggtttttctttggaagaaatattaaaaatacgtcaggaacat
aatgaagactttatttatttcgaaattaaaaaagaatcatttaaaaataaagatgaaatt
gaaaaaaaatgtaaattatttttagataagatagatcactatagagaaaaatcgtttgtt
ttgtttttagaagaattgatagaatacataatcgatgacagtttattatttgctttttgt
tattcaaaaccgaactcaaacgaaaaaatattaaacattgaaaaattttctgttttagca
aaagagtttcaagatacaaccaaatgtttaagcagttttgttgactatattcaaaactta
aaagataaaaaaataaaaataaatttaaacaaagaggatcttaatttagactatgtaaaa
attatcagcatacataaatccaaaggacttgagtttcccatatgcattttagccggatgt
tctaatgaatttctaagtgattacgatgaggtcataatggactcgaaaatcggaatgggt
attaaactaaaaaacgaaaacgggaccgttaaatttcagaacataataagaaaaatttgt
gaaaaaaaattgaaccaagaaaaaatatcagaagaaataagacttctttatgtagcttta
actcgcgcaaaagaaaacttgaccattatgattactgaaaaagatttaaaaagaaaaatc
gaaaacataataaaatattatgtcatatataaagaatgtgaaaataaattaatcgaagat
ttctattttaaaaattgcaaaagtttctccgattggattttgtatttaattataaaaaaa
accgactcagataactacgaaaattttataaaaaaagttagtttagacaaaaatataaaa
attttaagctataaagaagtaaacattttcgaaaataatagcaaaaacatagaaaaatat
gaaatgctagaagaaaacataaatttttctgattatttttcagaaaaaatgaagaaacgt
ttcgattttatttataaaaattctgaagaaaaaattccattaaaaatatccgcatcaaaa
cttgcctctaaaaacaattggcaggattttgcatcagtatttccttcatttataaatgac
aaattttcgcagacagaaatcggtatagcaattcataccttattgagtatttcgaatttt
gatattttgttgaaaaattatgattatcatttgaaacttttattttctgaaaaaaaaata
tcagaaaggcaatttaaaattttggttcaagaattaaataaactcaggatcaaaaaattt
ttaattggtgaattgggccaacgtttgatgcaaagcaagaaaatttttagagaatatcaa
ttttcgattctggaaaattttgataaaaataataagccaacaatgatacaaggagaaatt
gattgtgtttttcaggaaaataacgaatttataattattgattacaaaacagataagatt
tttcatattgatgaattattgaataaatatgcgaatcaattgcaaatttataaaaaagca
tttgaaaaatgcgagaagacgaaggttaatgagcttataatatactcttttcacttaaat
agttttataaatatagataaaaaatatcaaaatttttaa
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