Candidatus Improbicoccus pseudotrichonymphae: CfP315_0395
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Entry
CfP315_0395 CDS
T09760
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ips
Candidatus Improbicoccus pseudotrichonymphae
Pathway
ips03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ips00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CfP315_0395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ips03019
]
CfP315_0395
03016 Transfer RNA biogenesis [BR:
ips03016
]
CfP315_0395
Enzymes [BR:
ips01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CfP315_0395
Messenger RNA biogenesis [BR:
ips03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CfP315_0395
Transfer RNA biogenesis [BR:
ips03016
]
Prokaryotic type
tRNA degradation factors
CfP315_0395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
SPATA25
Motif
Other DBs
NCBI-ProteinID:
BED91860
UniProt:
A0AA48L0V2
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All DBs
Position
complement(410733..412796)
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AA seq
687 aa
AA seq
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MSYDKFEIELGSRRLSVEVGKMARQSDSCFVRWGDTVVFVAVTSSQESRVGIDFFPLSVD
FEERFYSVGKIPGSFLKREGKPSEKAVLSARQIDRAIRPLFPKDIKFDVLVSCVVMAVDE
NCSPNVAALIGVSVCLSISDIPWNGPISVGEAGLINGRTVLFPNASSGRDSSLKLVVATN
KSKILMIEVGADRVSEEKIVSAIEKIFQFNLKIIDFIENISKKSGKIKRILVSDEKDKNL
ELHIKQKYESLLYEVLNFKDKFVREREISKLTEKVLKESLEDYPDEEKKIREVLFDLQKN
IVRSWIINEDSRVDGRKMNEVRSLSSEVGLLPRVHGSALFTRGYTQVLTAATLGLLSQRQ
TIDDLTGEENKRFIHHYNFPSFSVGETRSSRAPARREIGHGAFVEKALCCVIPDENDFPY
TIRLVSEVLSSDGSTSQASVCASTLALMDAGVPISEPVAGISCGLLCDSEKNKWKTFVDI
QGIEDFFGDMDFKVAGTKTGITAIQMDTKVEGITLEIIKDALKKTKDARNYILENSILNV
ISSPRPEVSAYAPKVILFIIEINKIKDLIGSGGKVVQKISADCDVTIDIEQDGRVYIASG
EIDNCIQAVEVIKNITKDVNVGDIFKGKIVRIIDCGMFVEFAPGREGFCHISKLSRFKKI
NVGDLATIEAIGMDERRRLNFKCLSIK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagttatgataaattcgagattgagttaggaagtcgtaggttatccgttgaagtcggt
aagatggctaggcagtcggattcgtgctttgtaagatggggtgatacagttgtttttgtg
gctgtaacttcatctcaagaatctagggtcgggatagatttctttcctttgtcggttgat
tttgaggagcgtttttattctgttggcaaaatacctggttcttttttgaaacgtgagggc
aaaccgtcagagaaggctgtattatccgcaagacagatcgatagggcaatcaggcctttg
tttccgaaagatataaagtttgacgttttggtttcttgcgtcgtgatggcagttgatgaa
aattgttctccaaatgtagccgcgttgataggtgtttctgtatgtttaagtatttctgat
attccttggaatggtccgatttctgtaggagaggccggactgattaacggcagaacagtt
ttattcccgaatgcttcgtcgggtcgggattcatctttaaaattagttgttgcaacaaat
aaaagtaagattttaatgatagaggtcggcgcagacagagtttccgaagagaaaattgta
tcggcgatagagaaaattttccaatttaatcttaagataatagattttattgaaaatatt
tctaaaaaatcaggcaaaattaagagaattttggtttcagacgagaaagataaaaatttg
gaattacatattaaacaaaaatatgaatctctgttgtatgaagttttaaattttaaagat
aagtttgtaagagaaagagaaatctctaaattaaccgaaaaagtattaaaagaaagtttg
gaggattacccggacgaagaaaagaaaatcagggaggttttatttgatcttcagaaaaat
atagtgagaagttggattataaacgaagattcaagagtagatgggcgaaaaatgaatgaa
gtacggagtctttcgtctgaggtcgggttattgccaagagttcacggttctgctcttttt
acgcgtgggtatacgcaagttttaaccgctgccacgttggggcttttaagtcagcgacaa
accatagacgatttaactggagaagaaaataagaggtttattcatcattataattttccg
tctttttcggtcggagaaacacgttcgagtagggctccggccagaagggaaattggccac
ggggcttttgtggagaaggctttgtgttgtgttatacccgatgaaaacgattttccttat
accataagattggtttcggaagttttgtcatccgatggttcaacttctcaggcatctgta
tgtgcttctactttggcattgatggatgccggtgttcctatatctgaaccggtagcggga
atttcttgcggattattatgtgattctgaaaaaaataagtggaaaacctttgttgatatt
caaggcatcgaagattttttcggagatatggattttaaagttgcaggtaccaaaaccgga
ataacagctatacagatggatactaaagtagaaggcattactttggaaattatcaaggat
gctttgaaaaaaacaaaagatgcgaggaattatattttagagaattcgattctcaatgtg
atttcaagcccaagaccagaagtttcggcctatgctcctaaagttatattatttattatt
gaaatcaataagataaaggaccttataggttcaggcggaaaggttgttcaaaaaatttct
gccgattgtgatgtgacgatagatatagagcaagacggaagggtctatattgcttcaggc
gaaatcgataattgcatacaagctgtagaagtaataaaaaatataacaaaggacgtcaat
gtgggggatatttttaaaggaaaaatcgttagaataatagattgcggtatgtttgtagaa
tttgctcccggaagggaaggtttttgccatataagtaagctgtctagatttaaaaaaata
aatgttggagatcttgcaacaattgaagcaatcggtatggatgagcgcagaagattgaat
tttaaatgtttaagcattaaatag
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