Ictalurus punctatus (channel catfish): 100304497
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Entry
100304497 CDS
T04658
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100304497
09123 Folding, sorting and degradation
03018 RNA degradation
100304497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100304497
03041 Spliceosome [BR:
ipu03041
]
100304497
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100304497
mRNA cycle factors
Stress granule specific factors
100304497
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
100304497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
POP1_C
Motif
Other DBs
NCBI-GeneID:
100304497
NCBI-ProteinID:
XP_017332200
Ensembl:
ENSIPUG00000016620
UniProt:
A0A2D0RQH6
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All DBs
Position
9:complement(29569001..29592423)
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AA seq
634 aa
AA seq
DB search
MNAAGSSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEDMDDDRLKDIFDKYGKTLSVKVMTDPVGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPSQLTQMRPNPRWQQQGVRGQGGFQAVPNSLRQPGPRANIRHISPSANIQGPRGMPT
GAQRGAGSGQAMGARPGLGVTTPRAMPPYKYATAVRNTQPQVVQPITLQQAQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESHES
LRSKVEEAVAVLQAHQAKKDATQKAGAAAATATS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcggcggggagcagctacccgatggcttctctgtacgtgggagacctgcacccg
gacatcacggaggccatgctgtatgagaagttcagcccggccggcccggtgctctccatc
cgcgtctgccgcgacatgattacgcgccgctctctgggctacgcgtacgtcaacttccag
cagccagcggacgccgagagagctctggacacgatgaactttgacgtggtgaagggcaaa
cccatcaggatcatgtggtcacagcgagacccgtcgctccgcaagtcaggcgtgggaaat
gtcttcatcaaaaatctggacaagtccattgacaacaaggccctgtacgacaccttctca
gccttcggaaacatcctgtcctgcaaggtggtgtgtgatgagaacggatccaaaggctac
gcattcgtgcactttgagacgcaggacgctgccgaccgcgcaatcgagaagatgaacggc
atgctgctgaacgaccgcaaggtgttcgtggggagatttaaatccaggaaggagagagag
gccgagctcggagccaaagccaaggagttcaccaacgtctatatcaagaacttcggcgag
gacatggacgatgacaggctgaaagacatctttgataaatatggtaaaactctgagtgtg
aaagtgatgactgatcccgtggggaaatcacgaggattcggcttcgtcagctacgagaaa
cacgaagacgccaacaaggccgtggaggatatgaatggcacggagctgaacggtaagacc
gtgttcgtgggacgcgctcagaagaagatggagagacaagccgagctgaagaggaagttc
gagcagctcaagcaggagaggatcagcagataccagggtgtgaacttgtacatcaaaaat
ctggacgacaccatcgacgacgagaaactgcgcaaggaattctctccgttcggctccatc
accagcgccaaggtgatgctggaagagggacgctctaaaggctttggcttcgtgtgcttc
tcctctcccgaggaggccaccaaggccgtgacggagatgaacggacgcatcgtgggctcc
aagcctctgtacgtggcgctggcgcagcgcaaagaggagcggaaagctcacctcaccaac
cagtacatgcagcgcatcgccggtatgagagccatgccagctaacgccatcatcaaccag
ttccagcccaccagcggatacttcatgcccgctgtgccgcaggcccagaacagaaccacg
tactacgcccccagccagctcacccagatgaggccgaacccacgctggcaacagcaggga
gtcagaggtcagggaggcttccaagccgtgcccaattcgctgcgccaacctggcccccgt
gccaacattcgccatatctcacccagcgccaacatccagggaccccgcggcatgccaaca
ggtgcccagagaggggccggcagcggtcaggccatgggtgctcgccctggactcggcgta
accacaccacgcgccatgccaccttacaaatacgccaccgccgtgcgcaacacccagcct
caagtagtccaacccatcaccttacaacaggcccagccggcggtgcatgtacagggtcag
gagcctctgacggcctccatgctggctgcagctcctccacaggaacagaagcagatgctg
ggtgagcgtctgttcccgctgatccaggccatgcacccgactctggcggggaagatcaca
gggatgctgctggagatcgataactctgagctgctgcacatgctcgagtcccacgagtct
ctgcgctccaaggtggaggaggccgttgctgtgcttcaggctcaccaggcgaagaaagac
gcgacacagaaagctggagcagctgctgctactgctacatcttga
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