Ictalurus punctatus (channel catfish): 100304618
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Entry
100304618 CDS
T04658
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
100304618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
100304618
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100304618
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100304618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-RING_10
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
100304618
NCBI-ProteinID:
XP_017340080
UniProt:
A0A2D0SC87
LinkDB
All DBs
Position
14:12969650..12976321
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AA seq
1065 aa
AA seq
DB search
MDTMETELYVPPDSPRASMPDELCHPYSNFSNWKFKLFRVRSLEKAPLPSEPLLEKEAEV
KVGEQVDSLSVPGSLMKICLGGKNKENVEGTGRQVDLKLQEIDTHMDHLRSLCRLCGILL
RKAKGPKHEVQGNLDESSKYALRRMGCKASRWPDVILKVFKVDVSGDMESIHPPMFCHRC
WTVAMRGGGICSFSRTRVPIWKPHNSHCLQCYPKRHILQRRGKKRRKPLHSLPKRAKRET
STGGNRVWRQTIDNPPTMGLRTWVKPAAQRSLWVKNITQCQKDHLTSTLLPGDFPKDFVS
AIVCQVCDHLLSDPVQSPCQHLFCRTCIQKYSRVLGPQCPSCGFLFNPCDLNSPAKAFLS
ILHSLPLLCPREGCGELVRLDSFADHCLNHCFETDGKKEQNFPQQDVDGYLPVNKGGRPR
QHLLSLTRRAQKHRLRELKNQVKVFADKEEGGDVKSVCLTLFLLALRAGNEHKQADELEA
MMQGRGLGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELLPG
FHQFEWQPALKNVSNSCNIGIIDGLSGWTASVDDVPAETISRRFRYDVALVSALKDLEED
IMEGLRERGLDDSTCSSGFTVVIKESCDGMGDVSEKHGGGPAVPEKAVRFSFTVMSISIQ
AEGEEEAVTIFQEKKPNSELSCRPLCLMFVDESDHEILTAILGPVVAERKAMKESRLILS
IGGLQRSFRFYFRSTGYDEKMVRDMEGLEASGSTYICTLCDATRAEASQNMVLHSITRSH
DENLERYEIWRTNPFSESAEELRDRVKGVSAKPFIETQPTLDALHCDIGNATEFYKIFQD
EIAEVYLKNNPTREERRRWRSALDKQLRKKMKLKPVMRMNGNYARRLMTREAVEVVCELV
PSEERREALKELMELYLQMKPVWRSTCPARDCPDQLCRYSFNSQRFAEILSTTFKYRYDG
KITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDVLKH
HWLYTSKYLQKFMEAHRNSAKALQATINPEECPDDMDNSLDIIDF
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggatacgatggagacagagctgtatgttccaccagattcgccgagagcttccatgcca
gatgagttgtgtcatccttattccaacttctcgaattggaagtttaagctgtttcgagtt
cgttcattggagaaggctccccttcctagtgaaccgctcctggagaaggaggctgaagtg
aaggtgggagaacaggtggacagcctgagtgttcctggcagccttatgaagatctgtcta
gggggcaaaaataaagagaatgtggagggcactggcagacaagtggatctcaagcttcag
gagattgacacacatatggaccatctcaggtctttatgccgcttatgtggcatacttctg
agaaaagcaaaaggtcccaagcatgaagtccaaggaaacctggatgagtccagcaaatat
gcattgcgcaggatgggctgcaaggcttctagatggcctgacgtcatcctgaaggtgttt
aaagtagatgtgagtggagacatggaatccatccaccctcccatgttctgtcatcgttgc
tggactgtagctatgagaggagggggaatatgtagcttctccaggaccagggtccctata
tggaagccccacaactcacactgcctacagtgctaccccaagagacacatacttcagcga
agaggaaagaagagaaggaaaccactacatagtcttcccaaaagggcaaagagagagaca
tctacagggggcaatagagtgtggagacagaccatagacaacccaccaacaatgggcttg
aggacatgggtgaagccagctgctcagcggagcctttgggtaaagaatataactcaatgc
cagaaagaccacctaacctccaccctactcccaggtgattttccaaaagactttgtgagt
gctattgtgtgccaagtgtgtgatcacctattgtctgacccagtccaatccccatgccag
cacctcttctgccgtacctgcatccaaaagtacagccgtgtattgggtccccagtgtcca
tcctgtggcttcctatttaacccatgtgacctaaatagtcctgccaaagcctttctgtct
attctccactctcttcctctgctctgcccaagagaaggttgtggggaattggtcagatta
gactcctttgcagaccactgtctaaaccactgttttgagacagatggcaaaaaagaacag
aattttccccagcaggatgtggatggctacttacctgtcaacaaagggggtcgccctcgc
cagcacttgctctctctgacacgaagggctcagaagcacaggctgagagagctgaagaat
caggtgaaggtatttgctgataaggaggagggtggagatgtgaagtctgtgtgtttgaca
ctgttcctgctggcactgagggcaggaaatgaacacaaacaggctgatgagctggaggcc
atgatgcaaggcaggggtcttggcctccacccagctgtgtgtctggccatacgggtcaat
acattcctcagctgtagtcagtaccacaagatgtaccgcacagtcaaagctactagtgga
cgccagatattccagcccttacacactctccgtaatgctgaaaaggagcttcttcctggt
ttccatcaatttgagtggcaaccagctctcaaaaatgtgtcaaactcttgcaatattggg
atcattgatgggctttctgggtggacagcctctgtagatgatgtacctgcagagaccatt
tctagaagattccgttatgatgtggcactagtatcagctttaaaggacttggaggaggac
atcatggagggacttagagaaagaggattggatgacagcacctgctcctcaggtttcact
gtggtgattaaggagtcatgtgatggcatgggagatgtcagtgagaagcatggaggagga
ccagctgtcccagaaaaggcagtgagattttcgtttacagtgatgtctatctctattcaa
gctgaaggtgaagaggaagcagtcactatcttccaggaaaaaaagcctaactccgagctt
tcctgtaggccgctgtgcctcatgtttgtggatgagtctgatcatgagatactgacggcc
atcttgggacctgtggtggcagagcgtaaagctatgaaggagagtcgcctcattctctct
ataggtgggctccaacgctccttccgcttttattttaggagcacaggctatgatgaaaaa
atggtgagagacatggaaggtttggaggcttcaggctccacttacatctgcactctctgt
gacgcaacacgagctgaagcctctcagaacatggtgcttcactccatcactagaagccat
gatgaaaatcttgagcgctatgagatatggagaacgaaccctttttctgagtctgcagag
gagcttcgggatcgagtcaaaggggtctcagccaagcctttcatcgagacacaacccaca
ttagatgccttgcactgtgacattggcaatgctactgaattctataagatcttccaggat
gaaattgctgaagtgtacttgaaaaacaacccaactcgagaagagcgcagacgctggcgg
tcagcccttgacaagcagttaagaaagaagatgaagctaaaaccagtgatgagaatgaat
gggaactatgcccggcgacttatgacccgtgaggctgttgaagtggtgtgtgagctagtt
ccttcagaggagcgccgtgaggctctgaaagaactaatggagctgtacctccagatgaaa
cccgtgtggcgttctacctgtccagctcgagactgtcctgatcagctgtgccgctatagc
ttcaactctcaacgttttgcagagatcctctccaccacattcaaatatcgctatgatggc
aagattactaactacctccacaagactttagcccatgtacctgaaattgttgagcgagat
ggctcaattggtgcctgggccagcgaagggaatgaatctgggaacaaacttttccgccgc
ttccgtaaaatgaatgctaggcagtccaaaacatttgagttagaagacgtattaaaacac
cactggttgtacacatcgaagtatctgcagaagttcatggaggctcataggaactcagca
aaagcactgcaagctaccatcaacccagaggaatgcccagatgacatggataattctctt
gacataatagacttttaa
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