Ictalurus punctatus (channel catfish): 100304653
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Entry
100304653 CDS
T04658
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04137
Mitophagy - animal
ipu04140
Autophagy - animal
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100304653 (hif1al)
04137 Mitophagy - animal
100304653 (hif1al)
04148 Efferocytosis
100304653 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
100304653 (hif1al)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100304653 (hif1al)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
100304653
NCBI-ProteinID:
NP_001187141
Ensembl:
ENSIPUG00000004841
UniProt:
Q1L607
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Position
17:complement(11257914..11270825)
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AA seq
627 aa
AA seq
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MTTTEVKRPSSEQRKVRLRDAARCRRSQETEVFYELAHSLPLSRRITSHLDKAGIMRVTL
SYLRMRHLLHSSWTKAAEEEEEDPTDAFYQQALAGFILVLNEDGDMVFLSDNVNKFIGIT
QLELLGQSVYEYVHPCDQEELRDLLTTKPGLFKKKCDSCTECNFFLRLKSTLTSRGKTVN
IKSATWKVVHCTGRMKTLNQEGEGSSPVGSYMTLLCEPIPHPSCVEFPLDSSTFLTRHNM
DLHFIQCDGRVTELVGYHPNDLIGRSAYDFIHALDFDHLTRSLHVLLSKGQVCTYHYRFW
LVNGGFVWTETHVHVLYNSRTSQPEAVVCLNFILSAVEEADTVFSVEQTRSEVNQDEPNV
IEVEDSEDDMSSSSSSSELFHRFKNDPEDLLQLAPAPGDTIIPLTVNTELFFCPPSSPTT
VPKCPKELCTPKLRQLLSPIFDSSCPSSPDLSSADEVPMDTGEVEKFFANKPEETQKEPV
QELDDMDLDMLAPYISMDEDFQLTFLPQLPEAETQAAEAPSTASKKRGLEEKDDMPSLTS
KWEKRLKNCPIEEEFLLTPSSLMDLQVSGDLEELDPERWKQSQLLTDRDPVLGGTQALCD
TAALMPDSFSSQPPDLMARLTGTISLV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgacgactactgaggtgaaaaggccgagctcagagcagaggaaggtgcgtctacgtgat
gcagctcgctgtaggcggagtcaggagacggaggtgttctacgaacttgcccattcgttg
cccctgtcacgccgcatcacctcccacttggacaaagctgggatcatgagggtgaccctc
agctacctgcgtatgcgccaccttctccactcatcatggactaaggcagcggaggaggaa
gaggaggatcccactgatgcgttctatcagcaggcgctcgctggctttatcctggtgttg
aatgaagacggggacatggtcttcctctctgacaatgtcaacaagttcatcggcatcact
cagctggagttgcttggccaaagtgtgtacgagtatgtccatccatgtgatcaagaggag
ctgagagaccttcttaccaccaaacctggactctttaagaagaagtgtgacagttgtaca
gagtgcaacttcttcctgagactgaaaagcacacttacaagccgtggcaagactgtgaac
atcaagtctgccacctggaaggtggttcactgcacaggccgcatgaagacgctaaatcag
gaaggggaaggctcatcccctgttgggagctacatgactctgctgtgtgaacccatcccc
cacccgagctgtgtggagttccctctggacagcagcaccttcctcacacgccacaacatg
gacctgcacttcatccagtgtgatggccgggtgactgaacttgttggataccatcccaat
gatctgattggccggtctgcctatgattttatccatgcacttgattttgatcatctgaca
aggagcttgcatgttttgctctcaaaaggtcaggtgtgcacttaccattaccgcttctgg
ctagtgaatggaggatttgtttggactgagacccatgtgcacgtgctctacaacagcagg
acctcgcagcctgaagctgtggtgtgcctcaacttcatcctcagtgcggtggaggaggca
gacactgtgttctccgttgagcagacacgcagtgaggtgaatcaggacgaaccgaacgtg
attgaggtggaggactctgaggatgacatgagtagcagcagcagcagtagtgagcttttc
cacagatttaagaacgatcctgaggatctgctgcagctggcaccagccccaggagatacc
atcataccactgacagtgaataccgagttgttcttttgcccaccatccagccccaccaca
gtgcccaaatgtccaaaggagctgtgtacccccaaactccgccagctcctctcacccata
ttcgacagcagctgcccctcctcccctgatctgagctcggccgatgaggttcccatggac
actggtgaggtggagaagttctttgccaataagccagaagagactcagaaagagccagtg
caggagctggatgacatggatctggatatgttggcaccgtacatctccatggatgaagac
ttccagctgaccttcctgccccagttacctgaggcagagacacaggctgctgaagcacca
agcacagcttctaagaaaagaggcctggaggaaaaggatgacatgccatctctaacctcc
aaatgggagaagagactgaagaactgccccatagaggaggagtttctgctcacaccctcc
tcgctgatggacttgcaggtttcaggtgatttagaagagctggatcctgagcgttggaaa
cagagtcagctactgacagaccgagaccctgtgctggggggaacacaagcactgtgtgat
acagcagctttgatgcccgattctttctcatcacaaccccctgatttaatggcccgtcta
acagggactatatcactagtttga
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