Ictalurus punctatus (channel catfish): 100304754
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Entry
100304754 CDS
T04658
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
100304754
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100304754
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Helicases
100304754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WHD_POLR3C
AAA_22
Motif
Other DBs
NCBI-GeneID:
100304754
NCBI-ProteinID:
XP_017344034
Ensembl:
ENSIPUG00000006602
UniProt:
A0A2D0SMU9
LinkDB
All DBs
Position
16:110790..125960
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AA seq
570 aa
AA seq
DB search
MLQCYHVGENMDPRSVQFHEMGLDDRLLKAVADLGWAQPTLIQEKAIPLALEGKDILARA
RTGSGKTAAYAVPLIQRILTSKQTLQEQAVRALVLVPTKELGQQVQAMIRQLTTYCVRDV
RVADISGKTELSAQRPILMEKPDVVVGTPSRVQAHIKAQNLALNALDVLIIDEADLLFSF
GFEAELKDLICQLPKIYQAFLMSATLNNDVQALKELVLHNPVTLKLQGSQLPDESQLQQY
SVKCEEEDKFLLIYTLLKLGLVRGKTLIFVGSLDRCYRLKLFLEQFSIPSCVLNSELPVR
SRCHIISQFNQGFYNYIIATDEQRLDNPTAESKSTESSGKKKKKKKKSKSKTGKDKEYGV
SRGVDFQNIANVINFDFPTSLESYIHRVGRTARADNKGTALTFVSHSELSLLEEVENALT
EDSRNCALKPYGFKMDEIEGFRYRCRDAMRSVTKQAVKEARIKEIKQELLNSEKLQMYFE
DNPRDLQLLRHDKDLHPAIIKPHLRNVPDYLIPSSLKNLVNPFSCRKKKLKFKPNPKGVM
KTAFKKNIRGKNPLKSFRYARKAGKQKNKS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgctccagtgttatcacgtgggggaaaacatggatccccgaagcgttcagtttcacgag
atgggtttggacgaccgtcttttaaaggcggtagctgaccttggatgggcccagccgacc
ctcattcaagaaaaagccattccgctggctctcgaagggaaggatattttggcaagagct
cggaccggttcggggaagactgctgcttacgcggtgccgctgattcagcggatcctcacc
tctaagcagacgctgcaagagcaggcagtgcgagctttagtcctggtacccacaaaagag
ctgggacagcaggtacaggccatgattcgccagctcaccacctactgtgtccgagacgtt
cgtgtggccgacatctcgggcaaaacagagttatcagcccagaggccgattctgatggaa
aagccagatgttgtggtgggaactccgtctcgggtgcaagcccatatcaaagcccagaac
ttggcactgaacgctctggatgtgctcatcatcgatgaagcggaccttcttttctctttt
ggcttcgaggctgagcttaaggacctcatttgtcagttgcctaagatctatcaggctttc
ttaatgtctgcgacactcaataacgatgttcaggccttgaaggagctcgttctacacaac
cctgtgacgctgaagctacaaggctcccagcttccagacgagtcccagctgcagcagtac
agtgtgaaatgtgaggaggaggacaagttcctcctcatctatacacttctcaaacttggc
ctggtgcgaggcaagacgctcatattcgtcggcagtctggatcgctgttacaggctcaag
cttttcttggagcagttcagcattccttcctgcgtcctcaactctgaactccctgtgcgc
tcgaggtgtcacatcatatcacagtttaatcagggattctacaattacatcatagccaca
gatgagcaaaggcttgacaacccgactgctgaatccaagagtaccgagagcagtgggaaa
aagaagaagaagaaaaagaagtcaaagagtaaaacaggcaaagataaagaatatggtgtg
tccagaggtgtggacttccagaacatcgcaaatgtcatcaactttgattttcccacttct
ctagaatcctacatccaccgagttggcaggactgcaagggcagacaacaaaggcacagct
ctcacgttcgtctcccattcagagctctcgttgctggaggaggttgagaatgctcttaca
gaagacagcagaaactgcgccctgaagccatacgggttcaaaatggatgaaatagaagga
tttagatacagatgtcgggatgcgatgaggtctgtgaccaagcaagcagtgaaggaagcc
agaataaaggagatcaagcaggagctgctcaactctgagaagcttcagatgtactttgaa
gacaacccgagagatctgcaactgctccgtcatgacaaagacctccatcctgccataatc
aaaccccacctgagaaacgtaccagactacttgattccgtcctcgctgaaaaatctggtc
aaccccttctcatgccggaagaagaagctcaagttcaagcccaacccaaagggagtcatg
aaaactgccttcaagaagaatatcagagggaagaacccactgaagagttttcgctacgct
aggaaagccgggaagcagaagaacaaatcctaa
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