Ictalurus punctatus (channel catfish): 100304825
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Entry
100304825 CDS
T04658
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04137
Mitophagy - animal
ipu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100304825 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100304825 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100304825 (vcp)
03009 Ribosome biogenesis [BR:
ipu03009
]
100304825 (vcp)
04131 Membrane trafficking [BR:
ipu04131
]
100304825 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
100304825 (vcp)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
100304825 (vcp)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
100304825 (vcp)
Membrane trafficking [BR:
ipu04131
]
SNARE
SNARE associated proteins
Others
100304825 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100304825 (vcp)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100304825 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
100304825
NCBI-ProteinID:
XP_017307754
Ensembl:
ENSIPUG00000007814
UniProt:
W5UCE9
LinkDB
All DBs
Position
22:14527352..14537800
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKNRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDSCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNISWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGSAGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKAN
LRKSPIAKDVDLDFLAKMTNGFSGADLTEVCQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSNQGG
GGPSQGSAGGTGGNVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggtggagaatctaaaaatgatgatctttctactgccattttaaaacaaaag
aacagacccaacaggttgatcgttgatgaatccatcaatgaagataacagtgtggtctcg
ctctctcaggccaagatggatgagcttcagcttttcaggggggacactgtgctgctgaag
ggcaagaaaaggagggagacggtttgcatcgtactgtctgacgatagctgctctgatgag
aaagtgcgcatgaacagggtggtgcgcaataacctcagggttcgtctcggagatgtcatc
agcattcagccatgcccagatgtgaagtatgggaaacgcatccatgttctgcccattgat
gacacagtggagggaatcactggcaacttatttgaggtgtacctgaagccttacttccta
gaggcttaccggccaatccgtaaaggtgatatcttccttgtaagaggaggcatgcgtgct
gttgagttcaaagtggtggagactgatcctagcccttactgtatagtggctccagacact
gtcattcactgtgaaggagaacctattaagcgtgaggacgaagaagaatctctgaatgaa
gtcggctacgatgacattggaggtgtgaggaagcagctggctcagatcaaagaaatggtg
gagctgccgctcaggcacccagcactcttcaaggccattggcgtgaaacctccccgtggt
attcttctgtacggaccccccggaactggaaaaactctgattgctcgcgctgtcgcaaat
gaaactggagcattcttcttcctgatcaacggccctgaaattatgagtaaactggctggt
gagtctgagagcaacctgcgtaaagcttttgaagaagccgagaaaaacgctcctgccatc
atcttcattgatgaactggatgctattgcacctaagagagagaagactcacggtgaggta
gagaggcgcattgtgtctcagctgctcaccctgatggacggactgaagcagcgggctcac
gtgatcgtcatggctgccaccaacagacccaacagcattgacccagctctcaggcgattc
ggccgctttgacagagaggtggacattggtattcctgatgccacaggaagactggaaatc
ctgcagatccacactaagaacatgaagctggctgatgatgttgatctggaacaggttgcc
aacgagacccatggtcatgtgggtgctgatttggctgccctgtgctcagaggctgctctg
caggccatccgcaagaagatggacctcattgacctggaggatgagacgattgacgcagag
gtcatgaactccctggctgtcactatggatgacttcaggtgggccctgagccagagcaac
ccatcggctctgcgcgagactgttgtggaagtgcccaacatcagctgggaggacattggt
ggactggatgatgtcaagagagaactgcaggaactggtgcagtacccagtggagcatcca
gacaaattcctgaagtttggtatgactccatccaagggtgtgttgttctatggtccgcca
ggttgtggtaaaaccctcttggccaaggccattgccaatgagtgccaggccaacttcatt
tccatcaaaggccctgaactgctaaccatgtggtttggagagtctgaggctaatgttcgt
gagatctttgataaggctcgtcaagctgccccatgcgtgctcttctttgatgagctggac
tccattgctaaagcccgtggtggaagcgcaggtgacggcggtggagcagccgaccgcgtc
ataaaccagatcctgactgagatggacggcatgtccagcaagaagaacgtcttcatcatt
ggcgccaccaacagaccggatataattgaccctgccatcctcaggcctggccgtctggac
cagcttatctacatccctctgcccgatgagaaatctcgcatggccattcttaaagctaac
ctcaggaagtctccaatcgccaaggatgtagacctggacttcctggccaagatgaccaat
ggcttctctggtgctgacttgacagaggtttgccagcgagcctgcaaactggctattcgt
gagtccatcgagaacgagatcaggagggaacgtgagaggcagacgaacccatcagccatg
gaagtggaggaggatgacccagtgcccgagatcaggaaggaccacttcgaggaggccatg
cgtttcgcccgtcgctctgtcagtgacaacgacatccgcaaatacgagatgtttgcacag
accctgcagcaaagcagaggctttggcagtttcagattcccttccagtaatcagggagga
ggtggaccaagccaaggttccgcaggtggcactggagggaatgtcttcaatgaggacaac
gacgatgacctttacggataa
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