Ictalurus punctatus (channel catfish): 100304904
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Entry
100304904 CDS
T04658
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100304904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
100304904
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100304904
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100304904
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100304904
U7-dependent histone pre-mRNA processing factors
100304904
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
100304904
NCBI-ProteinID:
XP_017311319
Ensembl:
ENSIPUG00000023488
UniProt:
A0A2D0PZ44
LinkDB
All DBs
Position
25:complement(1541982..1549483)
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKSDVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSYKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALILEYEENDDERIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
RCAQGQRVSGILVKRNFSYHILTPSDLSNYTDLSMSTVKQTQAIPFTGPFSLLHSQLRHL
AGHVEEVETAEKNTLRIFNSITLIHDANTVILEWIANPLNDMYADAVATVVLEVQSNPKA
QKLIQPTEEKVDMEVFQSRLRIMFHDMFGEECVDFKDQHNLSVTVDGKTAYINLETRTVD
YEEGSADDDSLREMVEHAVQRLYDAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaagcggaagtcggatgtacctgttcccgctgaggaaagcgaccagcttctc
ataagaccgctgggagctggtcaagaagtgggcagatcatgcatcattttggaattcaag
ggacgtaaaatcatgctggactgtggtatccaccctggattagagggaatggatgcgttg
ccttacattgatctgattgaccctgctgaaattgatctactcctcatcagccacttccat
ctggatcactgtggggccctgccgtggtttttacagaaaacaagttataaaggaaggact
ttcatgacccatgcgactaaagccatttaccgctggctactttcagactacgtgaaagtc
agtaatatctcagcggacgacatgttgtacacagagacagacttggaagaaagcatggac
aagatcgagacgatcaacttccacgaggtgaaagaggtggctggtattaagttctggtgc
taccatgctggccatgtcttgggtgcagccatgttcatgatcgagattgccggtgtgaag
attctttatacgggagatttctctcgccaagaagacagacatttaatggcagcagagatt
cccagcgttaagccagacatcctaatcacggagtctacgtatggaacccacatccatgag
aagagagaggaaagagaagctcgtttttgtaacacggtccatgacatcgtgaaccgggaa
ggccgctgtctcatcccagtcttcgctctgggtcgagcacaggagctcttgctcatcctt
gacgaatattggcagaatcatcctgagcttcatgacattccgatttactatgcctcatcc
ctggccaaaaagtgtatggctgtgtaccagacttacgtcaatgccatgaacgacaagatc
cgcaaagccatcaacatcaacaacccctttgtcttcaagcacatcagcaacctcaagagc
atggaccatttcgatgacatcggccccagcgtggtgatggcgtctcctggtatgatgcag
agtggcctctccagagagctgtttgagagttggtgcactgacaagaggaacggtgtgatc
attgctggctactgtgtggagggaacactcgctaagcacatcatgtctgagccggaggag
atcaccaccatgtcgggccagaagctgcagctgaagatgtctgtggactacatttccttc
tcggctcacaccgactaccagcagaccagcgagttcatccgagcactcaaaccgccccac
gtgatcctggtgcatggagagcagaacgagatggcccgcctcaaggcagcgctcatttta
gagtatgaagaaaacgatgacgagcgcatcgaggtacataatccccgcaacactgaagcg
gtcacactcaacttcagaggagagaagctggccaaggtgatgggttctcttgctgataag
aggtgtgcgcagggtcagcgtgtctctgggatcttggtgaaacgcaactttagttatcac
atcctcacaccctcggacctctccaattatacggatttgtctatgagcacagtgaagcag
acgcaagccattcccttcaccggacccttctccttactccacagccagctacgtcactta
gcagggcacgtagaagaggtggagactgcggagaaaaacacactaaggatctttaacagc
atcacgttgattcatgatgccaatacggtcatactggagtggattgccaaccccctgaac
gatatgtatgccgatgcagtcgcaaccgtggttctggaggtgcagtcgaatccgaaagct
cagaaactcatacagcccacagaggagaaggtggatatggaagtcttccagagcagacta
cggatcatgttccatgacatgtttggtgaggagtgtgtagactttaaggaccaacacaat
ctgtctgtaacagtggatggcaaaaccgcctacattaacctggagaccaggacggtggat
tacgaggaaggcagcgcggacgacgattctctcagagagatggtggaacacgccgtgcag
aggctctacgacgccatgaatcctgtgatgtga
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