Ictalurus punctatus (channel catfish): 100304970
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Entry
100304970 CDS
T04658
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
100304970
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100304970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Helicase_C
BUD22
Motif
Other DBs
NCBI-GeneID:
100304970
NCBI-ProteinID:
XP_017344052
Ensembl:
ENSIPUG00000015830
UniProt:
A0A2D0SMW9
LinkDB
All DBs
Position
16:5746425..5765498
Genome browser
AA seq
1432 aa
AA seq
DB search
MVRKQAERRGNILQNAATLEVPENRSTMDPGQDLLLAALSESGICPNDLFDIDSQDTAQS
PASQQSISKNVLDISLGSEAAGIVGIEPAVPPTPTVTIRQKPQPSTTTFVLNQLNQLPSL
GTIVVTKPSMGTSSRQTITVTKVVQTPSSAQRSSSSSTAATVCSVVPPNREQIKLKDLLR
TSGGKTNSLGELMKLKPPPDIAQPVATATGTKIILLSTKLMNKPVEVNNGVKKEVSSKDV
ARIWANEEIKMRSFSPVNKLPGMKEEEEPEEEEEEELGHAETYAEYMPMKLKIGERHPDP
VVETSSLSSVNPPNVWYRLSVPEETIDRGWLSALQLEAITYASQQHETFLPNGDRAAYLI
GDGAGVGKGRTIAGIIYENYLLGRKRSLWFSVSNDLKYDAERDLRDIGAKNIQVHSLNKF
KYGKISSKHNGSVKKGVIFATYSSLIGESQTGGKYKTRFKQLLHWCGDDFDGVIIFDECH
KAKNVCPIGSSKPTKTGLAVLELQNKLPKARVVYASATGASEPRNMAYMNRLGIWGEGTP
FKEFSNFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFQGVTFKIEEVPLTHNYIKMYN
KSVRLWVSAREKFQQAANLMDAEQRMKKSMWGQFWSAHQRFFKYLCIASKVRRVVQLARE
EVKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTAKGVLQSLVEKHFPAPDRQKLFS
LLGIDLSAKKTPSPAETKEEQKGKKRKGAEVKKGAKKSRKSGGLSGSSSDESNSEDSDKN
DSDDSFNSVSSGDEDEDDFNPFKDDSSEDEEDDPWLIRKDSKKSKEKKNKKKKKSIDPDS
IQSALLASGLGSTRPAFTTPVVKATSNNAVVPAKSEPEESSCVTSNDAVEDAQQMKRELL
EQLEKLAEDLPPNTLDELIDELGGPENVAEMTGRKGRVVSNDDGSISYESRSELDVPVEI
LNLTEKQRFMDGEKNIAIISEAASSGISLQADRRVKNQRRRVHMTLELPWSADRAIQQFG
RTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGALTHGDRRATETRDLSRFNFDN
KYGRNALEIVMKSIVNLDAPLVSPPSYFEGDFFKEIRNGLIGVGLINVEDRSGVLSLDKD
YNNIGKFLNRILGMEVQQQNALFQYFSDTLNAVIQNAKKNGRYDMGILDLGSGDEKVKKL
DAKKFLTPGYSTSGHVELYTVSVERGMSWEDATHIWAEQSGPDDGFYVQVRNNKKIAIMV
KEVNTKKRLFMVYRPNTGKQLKLETYTDIRKRCKKVLSDEAKQCWVDQYKSSADVCSHAY
WRGNCKKASIGLQCEIGLRCRTYYVLCGSVLSVWTKVEGVLASVSGSNMKMQIVRLRTED
GQRIVGLIIPANCVAPLTNILSSSDQSQQLAVQQQQMWQQLHPQSLSHSFNT
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggttagaaaacaagcggagcgaaggggcaacatccttcaaaacgccgcgacactcgag
gtcccggaaaatcgttcaacgatggatccaggacaagatttgctccttgcagcccttagc
gaaagtggaatctgcccaaatgacctttttgacattgattctcaggacactgctcagtcc
cctgcctctcaacagtcaatctcaaagaatgtccttgacattagtcttggaagtgaagca
gctggaattgttggaattgaacctgctgtgccacccacacctacagtcacaatcagacag
aagcctcagccctcgaccacaacgtttgtcttaaatcaattgaatcaactgccatcgctg
ggaaccatcgtggtcacaaagccttcaatggggacctcctccagacagaccatcacagta
accaaggtggtgcagacgccatcgtcagctcagcgaagctcgtcgtcctccactgccgcc
accgtgtgcagcgtggtcccaccgaatcgggagcagattaagctgaaggacctgctccgg
accagcggtgggaagacgaacagccttggtgaacttatgaagctgaagcctccacctgat
attgctcagcccgttgctacagctacaggcacgaagattattttgctctccacaaagttg
atgaataaaccagtggaggtaaacaatggtgtgaagaaggaggtgtcgagcaaagatgtc
gccagaatctgggctaatgaggaaatcaaaatgcggagcttttcacctgtaaataagtta
cctggaatgaaggaggaggaggagccagaggaggaagaggaggaggaattaggacatgca
gaaacatatgctgaatacatgccaatgaaattgaaaataggagagcgacatcctgatcct
gtggtagagaccagttccctctcaagtgtcaaccctcctaatgtgtggtacagactttcc
gttccagaggagacgattgacagaggctggctatctgctcttcagcttgaggccattaca
tatgcttctcagcaacatgagaccttccttccaaacggagacagagcagcttacctgatc
ggtgatggtgctggtgttggaaagggaagaactattgctggaatcatatatgaaaactac
cttctgggcaggaaaagatctctctggtttagcgtctcgaacgacttgaagtatgacgca
gagagggacttgagagatattggtgcaaagaacatccaggtccattctttaaacaagttc
aaatatggaaaaatctcctcaaaacacaatggaagtgtgaaaaaaggtgtgatctttgct
acatactcatccctgattggagaaagccaaaccggtggaaagtataagacaagattcaaa
cagttacttcactggtgtggggatgactttgatggtgtgataatctttgatgaatgtcac
aaagccaaaaatgtttgcccaattgggtcatcaaaacccacaaagactggactggctgtt
ctcgagctccagaacaaactgccgaaagcacgtgtcgtctatgccagcgctacaggagcc
tctgagcctcggaacatggcttacatgaatcgtcttgggatctggggagaaggaacgcct
tttaaagaattttctaattttattcaagccgtcgaaagaagaggtgttggtgccatggaa
attgttgccatggatatgaaattgagaggaatgtacattgctcgacagctgagcttccag
ggtgtgacatttaagattgaagaagtccctctaacacacaactacatcaaaatgtataac
aagtcagtccgtctgtgggtgagcgcaagggagaaattccagcaagcagctaacttgatg
gacgccgaacagcgcatgaaaaaatcaatgtggggacagttctggtctgcacatcagcgg
ttctttaagtatctgtgcatcgcttcaaaggtgcgccgagtggtgcagcttgcccgagag
gaagttaagaatggaaagtgtgtggtcattggcctgcagtcaacgggtgaagctcgaaca
cttgaggccttggaggaaggtggaggcgagctcaatgactttgtctctaccgcaaagggt
gtcctgcagtccctggtggaaaagcacttccctgccccagacagacagaagctcttcagc
ttactgggtattgatttatcagcaaagaaaacaccttcaccagcagaaaccaaggaggag
cagaagggcaagaagaggaaaggtgcagaggttaaaaaaggagcgaagaagtcccgtaaa
tctggagggctttcaggcagcagttcggatgagagcaattcagaagactcggacaaaaat
gacagtgatgacagctttaactcggtcagctcgggagacgaagacgaagatgacttcaac
cccttcaaggatgattccagtgaggatgaagaggatgatccttggctaatccgtaaagac
tctaaaaagagcaaggaaaagaagaacaagaagaagaaaaagagcatagacccagattcc
attcaaagtgccttgttagcttctgggcttggatcgaccagacctgctttcacaacacct
gttgtaaaagctacgtccaacaatgctgttgttcctgctaaaagcgaacctgaagaaagt
agctgtgtgaccagtaatgatgcagtggaggatgcccagcagatgaagagagagttgctc
gagcagctagagaaactggctgaggatctgccacctaacacactggatgagcttattgat
gaattgggaggccctgaaaatgtggcagagatgactgggcgcaaaggcagagtagtcagt
aatgacgatggcagcatctcatacgaatcgaggtcagaactggacgttcctgtcgaaatc
ctgaacctcacagagaagcagagattcatggatggagagaagaacattgctataatctcc
gaggcggccagctccggtatttcacttcaagcggaccgtagagtgaagaaccagaggaga
agggtgcacatgactttagagctgccctggagtgcagaccgggctattcagcagttcggt
aggacacaccgatctaaccaggtcactgccccagagtatgtattcctgatatctgaactt
gctggagaacaaagatttgcctccattgttgccaaacgactagagagcttgggcgctctc
acacacggagaccgaagagccacagagacgagggacctcagtcgattcaactttgacaac
aaatatggcagaaacgctcttgagattgttatgaagtccattgtcaatttggatgctccc
ttggtctctccaccgtcttatttcgaaggggatttctttaaagaaatccgtaatggttta
attggtgtggggctgattaacgtggaggacaggtctggtgttctctcactggataaggac
tacaacaacattggaaaattcttaaaccggatccttggcatggaggtccagcagcagaat
gccctcttccagtatttctctgacaccctgaatgctgtcattcagaatgctaaaaagaat
ggccgatatgacatgggaattctggatttgggctctggagatgagaaggttaaaaagctt
gacgcgaaaaagttcttgactccaggttactccacatcaggccatgttgaactttataca
gttagtgtggagaggggtatgtcatgggaagacgctacccatatctgggcagaacagagc
ggaccagacgacggcttctacgtgcaggtacggaataacaagaaaatagctatcatggtc
aaggaagtcaacaccaaaaagagactcttcatggtgtacagaccaaatacaggaaaacag
ctcaaactggagacgtacacagacatacggaagcgatgcaaaaaggttctttcagatgag
gctaagcaatgctgggttgaccagtacaaatcttcagcagatgtttgctctcatgcttat
tggcgtgggaactgtaagaaggcatcaattgggctgcagtgtgaaatagggctgcgttgc
cggacatactacgtcctgtgtggctctgtcctcagcgtgtggaccaaagtagagggtgtc
ttagcctctgtaagcggaagcaacatgaagatgcagattgtccgtttgagaaccgaggac
ggacaacgaatagtaggtctgatcattccagcaaactgtgtggctcccctcaccaacata
ctgtcctcttcagaccaatcacagcagctggctgtgcagcagcagcagatgtggcagcag
ctgcacccacagagtctcagccactctttcaacacatag
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