Ictalurus punctatus (channel catfish): 100305068
Help
Entry
100305068 CDS
T04658
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04137
Mitophagy - animal
ipu04140
Autophagy - animal
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100305068 (hif1ab)
04137 Mitophagy - animal
100305068 (hif1ab)
04148 Efferocytosis
100305068 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
100305068 (hif1ab)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100305068 (hif1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
100305068
NCBI-ProteinID:
NP_001187230
Ensembl:
ENSIPUG00000017139
UniProt:
Q1L608
LinkDB
All DBs
Position
25:7483535..7500563
Genome browser
AA seq
776 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARCRRGKESEVFYELANHLPLPHNVTSHLDKASIMR
LTISYLRMRKLLNSDQSKDDTDKESELESQLNSFYLKALDGFLMVLSEDGDMVYLSDNVC
KCMGLTQFDLTGHSIFDFTHPCDHEEVREMLVHRTGSKKTKEQNTERSFFLRMKCTLTSR
GRTVNIKSATWKVLHCTGHVRVQEHSESSGGVGFKEPSITYLVLICEPIPHPSNIEVPLD
SKTFLSRHTLDMKFSYCDERITELMGYEPDELLNRSVYEYYHALDSDHLSKTHHNLFAKG
QVTTGQYRMLAKKAGYVWVETQATVIYNPKNSQPQCVVCVNYVLSGIVEEDMVLSLQQTV
PEKDCGEEEELQVEQEDKSVMDMMKLFKKDPLTCSVESSKSLYEKLKDKPEALTVLAPAA
GDTIISLDFDSPDSEIHVLKEVPLYNDVMLPSTSEKLPLPMSPLAPSDPSPDLVKMEPRG
EEFSFSSTSHHVSDTANTPSISASSSEPSSPADYFHVDSDIGSEFKLDLVEKMFATDTEA
DTHFNTDEMCDLDLEMLAPYIPMDDDFQLHIPSPLDPLSSGPQTGSDINSLFQQSPPRPS
STSSSTGSIKPEPSPHVPSPLHLLQEVSSIFVTSFDEASGAHDNTPQTGKAAKRMQVEDQ
DLSTKSLNVQRKRKLEITPLSQAVGLDVLLQSVDEAVEPGKRAKVLEVKGSSLLGGNKTI
LILPSDVASRLLSSSFESRGGLPQLTRYDCEVNAPIQDRQSLLQGEEQLRALDQVN
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcaccgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tccagggatgcggcccgatgtcgcaggggcaaggagtctgaggtgttctacgagctcgca
aaccatctgcccctgccccacaatgtcacctcccacctggacaaggcctccatcatgagg
ctcaccatcagctacctgcgcatgagaaaactgctgaactctgatcagtctaaggatgac
acagataaagagtctgaactggagagccagctcaacagcttttacctgaaggccctggac
ggcttcctaatggtgttatctgaggatggagacatggtctatctctctgataatgtctgc
aaatgcatgggcctcacacagtttgatttgaccggccacagcatttttgacttcacacat
ccctgtgatcacgaggaagtaagggagatgctggtgcacagaactgggtccaagaaaacc
aaggagcaaaacaccgagcgaagcttcttccttcgcatgaagtgcacactcactagtaga
ggacgcactgtcaacatcaagtctgccacatggaaagttcttcactgcacaggacatgtg
cgtgttcaggagcacagtgagagttcagggggcgttggatttaaagaaccctccattacc
tatctggttctgatctgtgagcccatccctcatccctccaacatcgaggtgcctctggat
agcaaaaccttcctaagccgccatactctggacatgaagttctcgtactgcgatgagaga
atcacggagctgatgggatatgagccagatgaactgctaaacaggtctgtgtatgaatac
taccatgccctggattctgaccacctcagcaagacacatcataatttgtttgcaaagggc
caggttaccacaggacaatatcgaatgctggccaagaaagcaggctatgtgtgggtcgaa
actcaagccacagtcatttacaaccccaagaactcccagccacagtgcgttgtgtgcgtg
aactacgttctcagtggtattgtggaggaggacatggtcctttctctgcaacagaccgta
cctgagaaagactgtggagaggaggaggagctgcaggtagagcaggaggacaagtcagtt
atggacatgatgaagctcttcaagaaggacccactgacgtgctctgtggagagctccaag
agcctgtacgagaagctaaaggataagccggaagccctcaccgttctggctccagctgca
ggggacaccattatttcccttgatttcgacagcccagactctgagattcatgtgctgaag
gaggtgcctctttacaatgatgtcatgctgccctccaccagtgagaaactccctttgccg
atgtcaccactggctcccagcgacccatctccagacttagttaaaatggagcctagagga
gaggaattttcattctcatccacatcgcaccacgtctcagacactgccaatactccttct
atctccgccagttcctctgagcccagcagtccagcagattacttccatgtggattcagat
attggctccgaatttaaactggatttggttgagaaaatgtttgctactgacacagaagcc
gacacccactttaacacagatgaaatgtgcgatcttgacctcgagatgctcgccccatat
attccaatggatgatgacttccagctgcatatcccctcccctctggacccactctcttct
gggcctcagactggttctgacattaactcgctgttccagcagtcacctcctcgtccatct
tcaacatccagctccaccggctcgataaaaccagagccatcgccccatgtcccctctcct
ctccacctgctgcaggaggtgagcagcatcttcgtcacatccttcgacgaggcctcggga
gcccatgacaataccccacagacgggcaaagcggccaagagaatgcaagtggaagaccag
gatctttctacaaagtcgttgaatgtccagcggaagaggaagctggagattaccccactg
tctcaggctgtcgggctggatgttttgctccaatctgtggatgaagctgttgagcctgga
aagagggccaaggttctggaggttaaaggttcgagcttgcttggcgggaacaaaaccatt
ctgatactaccgtctgatgtggccagtcgtttgctgtccagctcatttgagagcagagga
gggttaccacagctgacacgctacgactgcgaggtcaacgcccctattcaggaccgtcaa
tctctgctgcagggcgaggagcagcttcgtgctctggaccaagttaactga
DBGET
integrated database retrieval system
