Ictalurus punctatus (channel catfish): 100528076
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Entry
100528076 CDS
T04658
Symbol
ssu72
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
KO
K15544
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:
3.1.3.16
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100528076 (ssu72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
100528076 (ssu72)
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100528076 (ssu72)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
100528076 (ssu72)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100528076 (ssu72)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100528076 (ssu72)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssu72
Motif
Other DBs
NCBI-GeneID:
100528076
NCBI-ProteinID:
NP_001187275
Ensembl:
ENSIPUG00000018110
UniProt:
E3TDP5
LinkDB
All DBs
Position
21:complement(20874211..20882095)
Genome browser
AA seq
194 aa
AA seq
DB search
MPSHPLRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGSHVKLPGPAPDKPNVYDFKTT
YEQMYSDLVRKDKELYTQNGILHMLERNKRIKTRPERFQSCKDQFDLVITCEERVYDQVL
EDLNSREQETFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENDIDELLQEFE
DKSSRPFLHTVCFY
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgccaagccacccgcttcgcgtagcggtggtgtgctcgagtaaccagaaccgcagcatg
gaagcacacaacatcctcagcaagcgcggtttcgatgtgcgatctttcggcaccggaagc
catgtgaaactcccaggacccgctccagacaagcctaatgtgtatgacttcaaaaccact
tacgaacagatgtacagcgatctggtccgaaaggacaaggaactatacacacagaatggc
atcctgcacatgctggagcgcaacaagcgcatcaagacgagacctgaacgtttccagagc
tgtaaggaccagtttgacctggtcatcacctgcgaggagagagtgtacgaccaggttcta
gaggacctgaactcccgtgaacaggagacgttccagccggtgcacgtcatcaacgtggac
atccaggacaaccacgaggaggccacactcggggctttcctcatctgtgagctgtgtcag
tgtattcagcacactgatgatatggaaaatgatattgatgagctgctgcaggagtttgag
gacaaaagcagccgtccattcctccacacagtctgcttctactga
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