Ictalurus punctatus (channel catfish): 100528341
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Entry
100528341 CDS
T04658
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03420
Nucleotide excision repair
ipu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100528341 (rfc4)
03410 Base excision repair
100528341 (rfc4)
03420 Nucleotide excision repair
100528341 (rfc4)
03430 Mismatch repair
100528341 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
100528341 (rfc4)
03036 Chromosome and associated proteins [BR:
ipu03036
]
100528341 (rfc4)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
100528341 (rfc4)
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100528341 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
100528341 (rfc4)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100528341 (rfc4)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100528341 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
100528341 (rfc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
AAA_lid_RFC1
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_22
AAA_11
AAA_16
AAA_30
DUF815
AAA_14
Gp44_lid
Mg_chelatase
SLFN-g3_helicase
AAA_28
AAA_19
RuvB_N
AAA_5
AAA_24
ResIII
DNAX_ATPase_lid
Kinesin
AAA_7
UPF0176_N
Cdc6_lid
14-3-3
Motif
Other DBs
NCBI-GeneID:
100528341
NCBI-ProteinID:
NP_001187540
Ensembl:
ENSIPUG00000011897
UniProt:
A0A2D0RQI2
E3TEQ4
LinkDB
All DBs
Position
10:complement(26135623..26145371)
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGSTQGVKPQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKN
FAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLL
QSTARFSAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAATQ
ILSQFHDVIIEEKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQQATQSA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttctgaaaggatctacacaaggtgttaaaccgcagaaggacaaagctaca
gcttcgagcagtggagagaataagcgacagaaaccagtgccatgggtggagaaatacaga
cctaagtgcgtggatgaagtcgcctttcaagaggaggtcgttgcagttttgaagaaatcg
ctagagggcgctgatctcccaaatcttctgttttatggcccaccgggaacaggaaagact
tccactattcttgctgctgccagagagctttatggcccagagctttaccgacagagagtg
ctggagctgaacgcctcggatgagagagggattcaggtgatccgggagaaagtgaagaat
tttgctcagctcacggtggctggtacgcggacagatgggaaatcatgtcctccgtttaaa
atcataattctggacgaggcggattctatgaccggtgcggcccaggccgcgctcaggcgc
accatggagaaggagtcacgcacgacccgcttctgcctcatctgtaactacgtcagcaga
atcattgagcctttgacgtcccgctgctccaaattccgcttcaaacccctcactaacgag
gtccagcaggagcgtctgctggaaatctgtgcgaaggagaatctcaaatacagcaaagag
gggattgacgcgctggtcaaagtgtcggagggagatctccggaaagctataacgctcctg
cagagcacggccaggttcagcgcggagaaagagatcacggagagcctcgtcatagagatc
gcaggggtggttccacccaaagtgattgaaaatctgcttcagacctgctacaaaggcaac
tttgaaaaattagaggttgccgtgaagaatttggtagatgaaggctacgctgctacacag
atcctcagccagttccatgacgttattatagaggagaaactgggtgataaacagaagtct
gtcatcactgaaaagatggctgttgttgataagtgcttggtggacggagctgatgaatac
ttgcagctgctgaacctctgctccgtgatcatgcagcaggccacacagagcgcctga
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integrated database retrieval system
