Ictalurus punctatus (channel catfish): 100528376
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Entry
100528376 CDS
T04658
Symbol
arpc1a
Name
(RefSeq) actin-related protein 2/3 complex subunit 1A
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04144
Endocytosis
ipu04517
IgSF CAM signaling
ipu04530
Tight junction
ipu04810
Regulation of actin cytoskeleton
ipu05100
Bacterial invasion of epithelial cells
ipu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
100528376 (arpc1a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100528376 (arpc1a)
09144 Cellular community - eukaryotes
04530 Tight junction
100528376 (arpc1a)
09142 Cell motility
04810 Regulation of actin cytoskeleton
100528376 (arpc1a)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100528376 (arpc1a)
05100 Bacterial invasion of epithelial cells
100528376 (arpc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
100528376 (arpc1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
100528376 (arpc1a)
Membrane trafficking [BR:
ipu04131
]
Others
Actin-binding proteins
Arp2/3 complex
100528376 (arpc1a)
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
100528376 (arpc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_Aladin
Beta-prop_WDR35_TULP_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WD40_Gbeta
RMC1_N
Rax2
EIF3I
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
100528376
NCBI-ProteinID:
NP_001187575
Ensembl:
ENSIPUG00000017706
UniProt:
E3TEV1
LinkDB
All DBs
Position
24:6577617..6584711
Genome browser
AA seq
370 aa
AA seq
DB search
MSLHQFLLEPITCHAWNRDRTQIAISPNNHEVHIYKKSGNQWVKAHELKEHNGHITGIDW
APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI
SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVEEKP
APTPWGSKMPFGQVMVEYGGAGSGGWVHSVCFSASGNRLAWVSHDSTVTVVDPTKGSTPS
QLKTEFLALLSVTFVSENNIVAAGHDCCPMLFSFDDGGNLTFISKLDIPKQSIQRNISAM
ERFRNMDKRATTEDRNSTLETLHQNSITQVSIYEGDKRDCRKFCTTGIDGAMTIWDFKTL
ESSIQGLRIM
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgtcactccaccagtttctcttggagcccatcacatgccatgcatggaacagggacagg
actcaaattgctataagtccgaacaaccatgaggtgcatatatacaagaagagtgggaat
caatgggtaaaagcccatgaactgaaagaacacaatgggcacattacaggcattgattgg
gctcctaaaagcgatcggattgtaacctgcggagcggatcgtaacgcttacgtgtggagc
cagaaggacggcgtgtggaagcccactctcgtcatcctcaggatcaaccgtgctgccacg
tttgtgaagtggtctccgctggagaacaagttcgcggtgggcagcggagctcgcctcata
tctgtttgctacttcgagtctgaaaacgattggtgggtgagcaaacatatcaagaagcct
atccgctccactgtcctcagtctagactggcatccaaacaatgtgcttctggcagctggg
tcatgtgacttcaaatgcagggtgttttctgcatacatcaaggaggtggaggagaagcca
gctccaactccatggggatcgaagatgccgtttggccaagtgatggttgagtatggtgga
gcaggcagtggaggatgggtccacagtgtgtgtttctctgccagtggaaatcgactggcc
tgggtcagccatgacagcactgtgactgtggtggatcccacaaaaggctcaacgccaagc
cagttgaagacagagttccttgctcttctgagtgtgacctttgtgtccgagaacaacatt
gttgcagcgggtcatgactgctgcccaatgctgttcagtttcgatgatggtggaaacttg
accttcatatccaagttggacattccaaagcagagcatccagcgcaacatctctgccatg
gagcgtttccgcaacatggacaagagagccactaccgaggaccgcaatagcactctggag
acccttcaccagaacagcatcacccaagtgtctatatatgaaggagacaaaagagattgt
cgcaaattctgcactacaggaatcgatggagcgatgaccatatgggactttaagacttta
gagtcgtctatccaaggcctgcggatcatgtaa
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