Ictalurus punctatus (channel catfish): 100528379
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Entry
100528379 CDS
T04658
Symbol
nhej1
Name
(RefSeq) non-homologous end-joining factor 1
KO
K10980
non-homologous end-joining factor 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100528379 (nhej1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
100528379 (nhej1)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100528379 (nhej1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XLF
XLF_CC
XRCC4
Motif
Other DBs
NCBI-GeneID:
100528379
NCBI-ProteinID:
NP_001187578
Ensembl:
ENSIPUG00000004365
UniProt:
E3TEV5
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All DBs
Position
12:complement(4863613..4871612)
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AA seq
319 aa
AA seq
DB search
MERTGQTEGALLALPWVPVNIGGSKLLAKAWFGDTEYQLLLSDLNSVWEEQMSTNSIEHR
AQVLNKRLRAPVHTFVAHPRSVAWPFLSRQSCEQSTAVHFLLKHQGGHLTITLKSELGDV
PFYWEFHCTPASVAVVSRELVCPLLSMTQVLHRHVGELTALLLKKDAVIQDYKENGAVLS
RGRLLTEPFEEETYRRDFNQRLSKMLPDSLEFESELQELCVSICAARTARKRKRSGEYSS
ASVGSFVPDQDQTSCVPTGMRTASPGSNENYTRQQVEDTQYADTKETERLLPAAAVPPAV
TTNRSVMHPKKKKAAGLFQ
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggagagaacaggccagactgagggagctttgttggctttgccatgggtgcctgtgaac
atcgggggttccaagttgttggccaaagcctggtttggtgatacagaatatcaattgctg
ctgagtgacctgaacagcgtttgggaggaacagatgagcacaaacagcattgagcatcgt
gcacaggttctaaataagcgtctaagggctccagtgcacacatttgttgctcacccgcgc
tcagtggcttggccttttctctccaggcagtcctgtgaacagagcacagctgtacatttc
cttctcaagcatcaggggggccacttaaccatcacactcaagagtgagctgggagatgta
ccattctattgggaattccactgtacccctgcctcggtagcggtggtgtccagagagcta
gtgtgtcccttgttgtctatgactcaagtgctgcatagacatgttggagaactaactgct
ttgctgctcaagaaagacgctgtgatacaagactacaaagagaatggagccgtgcttagc
agaggtaggcttctgactgagccgtttgaggaggagacgtacagaagggactttaaccag
aggctttctaagatgctgccggacagtctggagtttgagtctgagctgcaggagctgtgt
gtgtccatatgtgctgcgagaactgcccggaaacgcaagcgctctggcgaatacagctct
gcttcagtaggcagctttgtccctgaccaggatcagaccagttgtgtgccaacaggtatg
aggactgcctctcctgggtctaatgaaaattatacaaggcagcaagtagaagacacacag
tatgctgacaccaaagagactgagagactcttacctgctgctgctgttcctcctgcagtt
acaacaaacagatcagttatgcatcccaagaagaagaaagcagctggactcttccaatga
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integrated database retrieval system
