Ictalurus punctatus (channel catfish): 100528400
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Entry
100528400 CDS
T04658
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100528400 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
100528400 (eif4a3)
03015 mRNA surveillance pathway
100528400 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100528400 (eif4a3)
03041 Spliceosome [BR:
ipu03041
]
100528400 (eif4a3)
03009 Ribosome biogenesis [BR:
ipu03009
]
100528400 (eif4a3)
03012 Translation factors [BR:
ipu03012
]
100528400 (eif4a3)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100528400 (eif4a3)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100528400 (eif4a3)
mRNA cycle factors
Stress granule specific factors
100528400 (eif4a3)
Spliceosome [BR:
ipu03041
]
Complex C
Other components
EJC/TREX
100528400 (eif4a3)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
90S particles
Helicases
100528400 (eif4a3)
Translation factors [BR:
ipu03012
]
Eukaryotic type
Initiation factors
eIF-4
100528400 (eif4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
100528400
NCBI-ProteinID:
NP_001187599
Ensembl:
ENSIPUG00000021785
UniProt:
E3TEY2
A0A2D0PFZ5
LinkDB
All DBs
Position
10:complement(22884866..22891924)
Genome browser
AA seq
389 aa
AA seq
DB search
MTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVSAQS
QSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIG
GTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY
DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE
WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE
FRSGASRVLISTDVWAGGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK
NDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagtggagtttgagaccagtgaagaggtcgatgttacgccgacgtttgatacg
atgggtctgcgggaggacctgctccgcgggatctacgcttacggttttgagaaaccatca
gctatccagcaaagagccattaagcagattataaaggggagagatgtcagtgctcagtca
cagtctggtaccggtaaaacagccacgttttgtgtatcagtgctgcagtgtctggacatt
caggtgcgtgagacccaggcgctaattttggctccaaccagagagttagctgggcaaatt
caaaaggttcttcttgctttgggtgacttcatgaacgtccagtgccatgcctgtatcggc
ggcacaaacgtgggcgaggacatcaggaagcttgattacggtcagcacgttgtagcagga
acccctggcagagtgtttgatatgatccgtcggagaagtctgaggacacgtgccatcaag
atgctggttctggatgaagctgatgaaatgcttaacaaaggttttaaggagcagatttat
gatgtgtaccggtaccttcctcctgctactcaggtggttctgatcagtgccacactgccg
catgagatcttggagatgaccaacaaattcatgactgaccccatccgcatcctggtcaag
cgtgatgagttgacgctggagggaattaagcagttcttcgtggctgtggagagagaagag
tggaagttcgacacactgtgtgatctctatgatacgctgaccatcacacaagcggtcatc
ttctgcaacaccaagagaaaggtggactggctgactgaaaagatgagggaggcaaacttc
accgtgtcctctatgcatggagacatgccccagaaagaaagagagtccattatgaaggag
ttccgatctggagccagccgagtgctgatctccacagacgtgtgggccggagggttggac
gtgccacaagtctctctcatcattaactacgacctgcccaacaacagagagttgtacatc
cacagaatcggacgatcggggcgttacggccgtaagggtgtggcaatcaactttgtaaag
aatgatgacatccgcatcctccgtgatattgagcagtactattccacacagattgatgaa
atgccaatgaacgtggctgatcttatctga
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integrated database retrieval system
