KEGG   Ictalurus punctatus (channel catfish): 100528419
Entry
100528419         CDS       T04658                                 
Symbol
polr2i
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03020  RNA polymerase
ipu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100528419 (polr2i)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100528419 (polr2i)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipu03021]
    100528419 (polr2i)
   03400 DNA repair and recombination proteins [BR:ipu03400]
    100528419 (polr2i)
Transcription machinery [BR:ipu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     100528419 (polr2i)
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100528419 (polr2i)
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_recom Zn_ribbon_GRF_2 Zn_ribbon_NrdR Zn_Ribbon_TF GpA_ATPase SR1P Lar_restr_allev Zn_ribbon_Top1 HVO_0758 DZR
Other DBs
NCBI-GeneID: 100528419
NCBI-ProteinID: NP_001187618
Ensembl: ENSIPUG00000001127
UniProt: E3TF07
LinkDB
Position
4:complement(22323658..22328453)
AA seq 126 aa
MDLEGGACEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYRQEADNSCIYVNKIT
HEVDELTQIIADVSQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHC
GHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atggatttggaaggcggcgcgtgtgagcccgggttcgtcgggatccggttttgtcaggaa
tgtaacaacatgctgtatccaaaagaggacaaagagaaccgcatcctcctctatgcttgt
aggaactgtgattatcggcaggaagccgataacagctgcatctacgtgaacaaaatcaca
cacgaagttgacgagctcacacagataattgctgatgtgtctcaagacccaacgctgcct
cgtaccgaagatcatccatgccctaaatgtggccacaaggaggcggtgttcttccagtca
cacagcatgaaggctgaggatgcaatgaggctgtactacgtgtgtacggctccacactgt
ggacacaggtggacagagtga

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