Ictalurus punctatus (channel catfish): 100528456
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Entry
100528456 CDS
T04658
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03420
Nucleotide excision repair
ipu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100528456 (rfc3)
03410 Base excision repair
100528456 (rfc3)
03420 Nucleotide excision repair
100528456 (rfc3)
03430 Mismatch repair
100528456 (rfc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
100528456 (rfc3)
03036 Chromosome and associated proteins [BR:
ipu03036
]
100528456 (rfc3)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
100528456 (rfc3)
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100528456 (rfc3)
DNA Replication Termination Factors
ELG1-RFC complex
100528456 (rfc3)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100528456 (rfc3)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100528456 (rfc3)
Check point factors
HRAD17(Rad24)-RFC complex
100528456 (rfc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA
AAA_22
AAA_16
AAA_11
DUF2247
ABC_tran
Motif
Other DBs
NCBI-GeneID:
100528456
NCBI-ProteinID:
NP_001187655
Ensembl:
ENSIPUG00000010320
UniProt:
E3TF57
LinkDB
All DBs
Position
16:10381989..10393560
Genome browser
AA seq
356 aa
AA seq
DB search
MSLWVDKYRPTSLAKLDYHKEQANHLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY
GAGVEKLRIEHQSIVAPSKKKIEINAIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ
IQSSTQREFKVVLLTEVDRLTKDAQHVLRRTMEKYMGTCRLILCCNSTSKVISPIRSRCL
AVRVPLPSTEEVCSVMMSVCKKEGLILPPELAKRIAEKSGRNLRKALLMCEACRVQQYPF
SADQDIPETDWEVYLRETANAIVNQQSPQRLLEVRARLYELLTHCIPAEIIMKGLVCELL
SNCDGHLKPEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMTIYKQFMEDGLDNFMF
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgtgggttgataagtacagaccaacgtctctggcgaagctggactatcataaa
gaacaagcaaatcacctcaaaagtctggtacaatgtggtgatttcccgcacctgcttgtt
tatggtccatcaggtgctggcaaaaagacccgaattatgtgtctcctccgtgagctgtat
ggtgctggggtggagaagctccggattgaacaccagtccattgtagctccatctaaaaaa
aagattgaaatcaacgcaattgcaagtaactaccatttggaggtgaatccaagtgatgca
ggaaacagtgaccgtgtcgtcatccaagagctaatcaaaacagtggctcagtcacagcag
atacaatccagcacacagagagagttcaaagtggttcttctgacggaggtggaccggctc
accaaagacgcgcaacatgtcctgcgccgtaccatggagaaatacatgggcacctgtcgc
ctcatcctgtgctgcaactccacctctaaagtgatctctcccatcaggagcaggtgcctg
gctgtaagagtgccactgccaagcactgaggaggtgtgcagtgttatgatgagcgtgtgc
aaaaaggaagggcttattctcccacctgagctggccaaacggatcgccgagaagtcaggt
cgcaaccttcgcaaagctcttctcatgtgtgaggcctgtcgagtgcaacagtatcctttt
tctgcagatcaggacatccctgaaacagactgggaagtgtacctcagagagacggctaac
gccatcgtcaatcagcagagcccacaaagacttttggaggttcgggcaagactttatgaa
ctattaactcactgtattccagcagaaatcatcatgaaggggcttgtgtgtgagctgctc
agtaactgtgatggccatctaaaacctgaggtggcacaaatggcagcctactatgaacac
agactacagttgggcagcaaagccatttaccacctggaggccttcgtggcaaagttcatg
accatctataagcagtttatggaggatggactcgacaacttcatgttctga
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