Ictalurus punctatus (channel catfish): 100528458
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Entry
100528458 CDS
T04658
Symbol
snrpd2
Name
(RefSeq) small nuclear ribonucleoprotein Sm D2
KO
K11096
small nuclear ribonucleoprotein D2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100528458 (snrpd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
100528458 (snrpd2)
03032 DNA replication proteins [BR:
ipu03032
]
100528458 (snrpd2)
Spliceosome [BR:
ipu03041
]
Complex A
U1 snRNP components
Sm proteins
100528458 (snrpd2)
U2 snRNP components
100528458 (snrpd2)
Complex B
U1 snRNP components
100528458 (snrpd2)
U4/U6.U5 tri-snRNP components
100528458 (snrpd2)
Complex C
U2 snRNP components
100528458 (snrpd2)
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
100528458 (snrpd2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
GIT1_C
Ldh_1_C
Motif
Other DBs
NCBI-GeneID:
100528458
NCBI-ProteinID:
NP_001187657
Ensembl:
ENSIPUG00000001053
UniProt:
E3TF59
A0A2D0PG33
LinkDB
All DBs
Position
4:complement(22290059..22293789)
Genome browser
AA seq
118 aa
AA seq
DB search
MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
NT seq
357 nt
NT seq
+upstream
nt +downstream
nt
atgagtctattgaacaagccgaagtcagagatgacccctgaggagctgcagaagcgtgag
gaggaggagtttaacaccgggccgctgtccgtcctcacacagtccgtcaagaacaacacg
caggtgcttatcaactgccgcaacaacaagaagctgctggggcgagtcaaagcctttgac
agacactgtaacatggtcctggagaacgtaaaggaaatgtggactgaggtacccaagagc
gggaaaggaaagaagaagtccaaaccagtgaataaagaccgttacatctccaagatgttt
ctgagaggagactcggtcatcgtggtgctgaggaatcctctgatcgccggcaaataa
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