Ictalurus punctatus (channel catfish): 100528496
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Entry
100528496 CDS
T04658
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100528496 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100528496 (exosc8)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100528496 (exosc8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100528496
NCBI-ProteinID:
NP_001187695
Ensembl:
ENSIPUG00000009497
UniProt:
E3TFB1
A0A2D0PFA9
LinkDB
All DBs
Position
16:complement(9853397..9864077)
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AA seq
277 aa
AA seq
DB search
MAAGFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVIC
GIKAELATPTADAPDKGYIVPNVDLPPLCSSRFRPGPPGEQAQVASQFIADIIDDSNIIK
KEDLCIGKSKLCWVLYCDIMCLDYDGNLPDACIITLLAALKNAQLPKVTINKETDLPEVD
VQHKRHLQINKHPVASSFAVFDDEVIIVDPTTEEESLATALITAVTDENDQLCAFHKPGG
SSLSAEKLQGCISRAVTRNREINKLIDRVTESIKSTK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggtttcaagacagcagagccactggagtaccacagaagctttttgaaagaa
aactgccggccagatggaagagagctgggagagttcagacctacaacactgaacactggt
tcaataagcactgcagatggctcagcgttggtgaagattggaaacgccacagtcatctgt
ggcataaaagcagaactggccacgcccacagctgatgcccctgataaaggatatattgtt
ccgaatgtggatctgcctcctctgtgctcatccagatttcgtcctggtccccctggagaa
caggctcaggtggccagccagttcattgcagacatcatcgacgactctaacattataaag
aaagaagatttgtgcatcgggaagtcaaagttgtgctgggtcctgtactgtgatatcatg
tgtttagactatgatggaaatttacctgatgcctgcatcataacattactggcagcatta
aagaatgcacaacttcctaaagtcacaattaacaaagagacagatttacctgaggttgat
gtgcagcacaagagacatctgcagattaacaagcacccggttgcctcatcattcgcagta
tttgatgatgaagtaattatagtggacccaacaacagaagaggaaagtctggctacagca
ttaataaccgcagtcacagatgagaacgatcagctctgtgctttccataaaccagggggc
agttccttatcagcagagaagctgcagggctgcataagtcgagctgtgacccgaaatcga
gagatcaacaaactcatagacagagtcactgagagcataaagtcgacaaaataa
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