Ictalurus punctatus (channel catfish): 100528551
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Entry
100528551 CDS
T04658
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100528551 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
100528551 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100528551 (lsm7)
03041 Spliceosome [BR:
ipu03041
]
100528551 (lsm7)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100528551 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
100528551 (lsm7)
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100528551 (lsm7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
InhA-like_MAM
Motif
Other DBs
NCBI-GeneID:
100528551
NCBI-ProteinID:
NP_001187750
Ensembl:
ENSIPUG00000024724
UniProt:
E3TFI6
A0A2D0PH16
LinkDB
All DBs
Position
10:17190159..17193216
Genome browser
AA seq
103 aa
AA seq
DB search
MADKEKKKKESIFDLSKYINKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTAVVLICPQDGMEAIPNPFVQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagagaagaagaagaaagagagtatatttgacttgtcaaagtacatcaac
aaaaccatcagagttaaattccaaggtggacgtgaagcgagtggtgtcctgaaagggttc
gatcctctgctgaacctggtgctagacggtacaattgagtacatgcgtgacccagatgat
cagtataaactgactgaggacaccaggcagctcggccttgtcgtgtgtcgagggacggct
gttgtcctcatctgtcctcaagacggcatggaggccatccccaaccccttcgtacagcag
caggacggctaa
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integrated database retrieval system
