Ictalurus punctatus (channel catfish): 100528569
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Entry
100528569 CDS
T04658
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100528569 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
100528569 (cpsf4)
03019 Messenger RNA biogenesis [BR:
ipu03019
]
100528569 (cpsf4)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100528569 (cpsf4)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100528569 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-CCHC_3
RecO_C
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
100528569
NCBI-ProteinID:
NP_001187768
Ensembl:
ENSIPUG00000017147
UniProt:
E3TFL1
LinkDB
All DBs
Position
24:6214082..6219230
Genome browser
AA seq
271 aa
AA seq
DB search
MQEIIANADHFKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRSACLKGGMCPFRHI
SREKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTNEQPP
LPQQAQTQQKQNAQNLNRSSLSLIQLTSNNSIANINHQKPPHILGASQPQNNTGGPRGPR
PLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaataattgctaacgctgatcacttcaagtttgatctggagattgcggtcgag
cagcagttaggggctcaaccgctgccgtttccaggaatggacaaatcaggtgcagctgtg
tgcgagtttttcatgagatctgcttgtctgaaaggtgggatgtgtccttttcggcacatt
agcagagaaaagacagtggtttgtaaacattggcttcgaggattatgcaagaaaggagat
cagtgcgaatttctacacgagtatgacatgacgaagatgcccgaatgctatttctactcc
aaatttggggaatgcagtaataaagaatgtcctttcttgcacattgacccggaatctaag
attaaagactgtccgtggtatgaccgagggttttgcaagcacggcccggattgccgacac
agacacacacggagggtgatctgtgttaattatctagtaggcttctgtcctgagggcaag
tcctgcaagtttatgcacccacgctttgagctgcctatggggacgaatgaacagccacct
ctgcctcagcaagctcagacccagcaaaagcaaaacgcacagaacttgaacagatcatcg
ttgtcactgatccagttaaccagcaacaactccattgctaacatcaaccatcaaaaacct
ccacacattctcggagcttcacagcctcagaacaacacgggcggcccccgaggccctcgc
ccgctggaccaggtcacgtgttacaagtgtggagagaagggacattacgcaaacaaatgc
acaaaaggacacctggctttcctaagtggacagtga
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