Ictalurus punctatus (channel catfish): 100528603
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Entry
100528603 CDS
T04658
Symbol
smn1
Name
(RefSeq) survival motor neuron protein 1
KO
K13129
survival motor neuron protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
100528603 (smn1)
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
100528603 (smn1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMN_YG-box
SMN_Tudor
SMN_G2-BD
TUDOR
Motif
Other DBs
NCBI-GeneID:
100528603
NCBI-ProteinID:
NP_001187802
Ensembl:
ENSIPUG00000012580
UniProt:
E3TFQ3
LinkDB
All DBs
Position
22:complement(11770900..11777524)
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AA seq
315 aa
AA seq
DB search
MLLTSSTSGTSGRTLLHSGNLLQCVYLGVGFICAVFMANGTSEVVFCRGTGQSDDSDIWD
DTALIKAYDKAVASFKNALKGEDAMAPHTKEKPGNKRKNNKKSKSRKKSNTSPEGEWNVG
DACYAYWSADGNLYAATISSVDLEKGTCVVYYNDYGNEEEQNLSDLLTDAAELDGESQKM
ADGKEVESSTEETDRSSTPHQSNQQKHKAKGKAPVVPPMWGPGFPPFPPPGSHFRMSDSR
RAGGSGPSFPGWSPMMPPGPPMIPPPPPISPDMLEDDEALGSMLISWYMSGYHTGYYLGL
KQGRKEAAAKKSHYK
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgttattgacgtcatcaacctccggcacgtcagggcgcacgctactgcattcgggaaat
cttttgcagtgtgtttatcttggtgttgggtttatatgcgcggttttcatggcaaatgga
acaagtgaagttgtgttctgtcgcggaaccggtcagagtgacgactcggacatctgggac
gacacggccttgattaaagcttatgataaagccgttgcatcgtttaagaatgcgctgaaa
ggagaagacgcaatggctccacatacaaaagagaaacctggcaataagcgaaaaaacaac
aaaaagagcaaaagcagaaagaaaagtaacacatctcctgaaggagagtggaacgtcggg
gatgcctgttatgcgtattggtctgcagatggaaacttgtacgctgccaccatctcctca
gtcgacctggagaagggcacctgcgtcgtatattacaacgactatggaaacgaggaggaa
cagaatctgagtgaccttctcacagacgctgcagaattggatggggagtcacaaaagatg
gccgacgggaaagaggtggagtcttctacagaggagactgataggtcttctactccacat
cagtctaatcaacagaaacacaaagctaaaggcaaagctccggtggtacctcctatgtgg
ggtcctggctttcctccttttcctcctcctggctctcacttcagaatgtctgacagcaga
agagcaggaggctctggaccgtctttccctggctggtccccaatgatgcctccaggtcca
ccgatgatcccaccaccaccaccaattagtcctgacatgttggaggatgatgaggcttta
ggcagcatgttgatctcctggtacatgagtggctaccacacaggatattacctaggctta
aaacaaggccgcaaagaagctgccgcgaagaagtcccactacaaatga
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integrated database retrieval system
