KEGG   Ictalurus punctatus (channel catfish): 100528684
Entry
100528684         CDS       T04658                                 
Symbol
snf8
Name
(RefSeq) vacuolar-sorting protein SNF8
  KO
K12188  ESCRT-II complex subunit VPS22
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100528684 (snf8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ipu04131]
    100528684 (snf8)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    100528684 (snf8)
Membrane trafficking [BR:ipu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-II complex
    100528684 (snf8)
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   100528684 (snf8)
SSDB
Motif
Pfam: EAP30 CDK5RAP3 DotZ RPA_interact_C DUF4896
Other DBs
NCBI-GeneID: 100528684
NCBI-ProteinID: NP_001187883
Ensembl: ENSIPUG00000000554
UniProt: E3TG14
LinkDB
Position
13:complement(13324962..13327166)
AA seq 258 aa
MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQIAQMSKQLETFKTHLEEFASKHKQEIRK
SPQFRAQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
LDELHQRVLKGRGKFAQDVSQDDLVRAIKKLKAMGNGFGMIPVGGSYLVQSVPAELNMDH
TVVLQLAEKKGYVTVSETKDNLKWEKERACHVLDDLLKEGLAWLDTQAAGEPQYWLPALF
SELSSRDVTPEEENQMTP
NT seq 777 nt   +upstreamnt  +downstreamnt
atgcacagaagaggagttggagcaggggctatcgctaagaagaaacttgcagaggccaag
tacaaagagagaggtacagtcttggctgaagatcagattgcacagatgtctaagcagtta
gaaactttcaaaacacatttggaagagtttgctagcaaacacaagcaagagataagaaag
agtccacagttcagggcgcagtttcaagaaatgtgtgccacaataggagtggatcccctg
gcatctggtaaaggattttggtctgagatgctcggagttggagacttctattatgagctt
ggagtgcagataattgaagtctgtctagctctaaagcacagaaatggcggactaattaca
ctggatgaacttcatcagcgtgtattaaagggaagagggaagtttgcacaagatgtgagt
caagatgatttagtacgagccatcaaaaagcttaaggcaatgggaaacggctttgggatg
attcctgttggaggttcttatttagtccagtcagttccggctgagcttaatatggatcac
actgttgttcttcagctggctgagaaaaagggttatgtaacagtaagcgagaccaaggac
aaccttaagtgggagaaagaacgtgcttgccatgtacttgacgacctgctgaaagaaggg
ctggcatggttggatacccaggctgcaggagaaccacaatactggctgcctgccctcttc
tctgaactatcttctcgtgatgtcactcctgaggaagagaatcagatgacaccatga

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