KEGG   Ictalurus punctatus (channel catfish): 100528854
Entry
100528854         CDS       T04658                                 
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100528854 (tbpl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ipu03000]
    100528854 (tbpl1)
   03021 Transcription machinery [BR:ipu03021]
    100528854 (tbpl1)
Transcription factors [BR:ipu03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    100528854 (tbpl1)
Transcription machinery [BR:ipu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100528854 (tbpl1)
  RNA polymerase III system
    TFIIIB
     100528854 (tbpl1)
  RNA polymerase I system
    SL1/TIF-1B
     100528854 (tbpl1)
SSDB
Motif
Pfam: TBP P22_Gp10_C
Other DBs
NCBI-GeneID: 100528854
NCBI-ProteinID: NP_001188053
Ensembl: ENSIPUG00000010601
UniProt: A0A2D0PI09 E3TGP6
LinkDB
Position
15:21994097..22001857
AA seq 186 aa
MEPSNDVALDIIITNVVSVFRTRCHLNLRTIGLEGNNVIYRPEVGKVLMKLRKPRITASI
WSSGKIICTGATSEDEAKVGARRLARCLQKIGFKVRFSDFKVVNVLAVCSMPFQIRLIEF
TKNNRPIASYELELHPAASYRIKTLRATVQVFSTGSVTVTGPNVQSVASAVEQIYPLLFE
CQKKLA
NT seq 561 nt   +upstreamnt  +downstreamnt
atggaaccgagtaacgatgtggcgctggacattatcatcacaaacgtggtttctgtcttc
aggaccaggtgtcatttaaacctgcgcactatcggcctggaggggaataacgtcatctac
agaccggaagtagggaaagtacttatgaagctccgcaaacctcgcatcactgcctccata
tggtcatcagggaaaatcatttgcactggagcaacaagtgaggacgaggctaaagtgggt
gccaggaggttggcccgctgcctccagaagataggattcaaggtcaggttttcagatttt
aaggtcgtaaacgtcctggcagtgtgctccatgccttttcagatccgcctcatcgagttc
accaagaacaaccgtcccatagccagctacgagcttgagcttcacccagctgcatcgtac
agaattaaaacccttagagcaacagtgcaggtgttctccacaggcagcgtcacagttaca
ggaccaaatgttcagagtgttgcctcagctgtggaacagatatatcctctattgttcgag
tgtcagaaaaaactggcgtaa

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