Ictalurus punctatus (channel catfish): 100528874
Help
Entry
100528874 CDS
T04658
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100528874 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
100528874 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
100528874 (mnat1)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
100528874 (mnat1)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100528874 (mnat1)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100528874 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
zf-C3HC4
TRAF3_RING
zf-UDP
zf-RING_2
zf-P11
Motif
Other DBs
NCBI-GeneID:
100528874
NCBI-ProteinID:
NP_001188073
Ensembl:
ENSIPUG00000002697
UniProt:
E3TDY7
LinkDB
All DBs
Position
3:complement(180701..194915)
Genome browser
AA seq
310 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCENCVEMLFVRGSGNCVQCDTPLRKSNFRL
QLFEDPAVDKEVEIRKKVLKIYNKRDLDFPSLSEYNDYLEQVEEIVFNLTNNLDVENTKQ
MMEQYQRDNRDIIQRNKAKLTREQEELEEILLMEQQDLEMKRLENLQEEQRHLHTKRKNK
QALLDELESSHLPASLLLAQQKERAAQLGSQIEKQKQNVKPATIFSTGILMGQTVSLAPV
ARMEEALYQYQPLQIETYGPAVPELEQLTRLGYLNHVRMATQQDLAGGYTSGLACHRAVQ
DAFSGLFPCT
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggacgatcagggctgcccgagatgcaagacgacaaaatacagaaacccgtctttaaag
ctgatggtgaatgtgtgcggacacacactttgtgagaactgtgtggagatgttgtttgtg
cgaggttcaggtaactgcgttcagtgtgacactccgctcaggaagagtaacttccgcctg
cagctcttcgaagatcctgctgtggataaagaggtggagatccgaaagaaagtgctcaaa
atatataacaagcgtgacctggacttccccagtctgagcgagtataacgactacctggag
caggtggaggaaatcgtgtttaacctgaccaataacctggacgtggagaacaccaagcag
atgatggagcagtaccagagagacaacagggacatcatccagagaaacaaggccaaactg
acgagggaacaggaggagctggaggagatcttgctaatggagcagcaggatctggagatg
aagagactggagaacctgcaggaggaacagaggcacttacacaccaagaggaaaaacaaa
caggccctgctcgatgagctggagagctcccatttgcccgcttccctcctcttggctcag
cagaaagagcgagcggctcagctggggagtcagatcgagaaacaaaaacaaaacgtcaaa
cctgccaccatcttctctacaggcatactgatgggtcagacggtgtctctagctccagtc
gctcgtatggaggaggctttgtatcagtatcaacctctacaaatcgaaacctacggccct
gcggtgcctgaactggagcagctgaccagactgggctatctgaatcatgtcagaatggcg
actcagcaggatttagcgggtggctatacatcaggtctggcgtgtcaccgggccgtgcag
gacgccttcagtggtctctttccctgcacgtaa
DBGET
integrated database retrieval system
