Ictalurus punctatus (channel catfish): 108255129
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Entry
108255129 CDS
T04658
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X2
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108255129 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108255129 (taf4a)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108255129 (taf4a)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108255129 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
108255129 (taf4a)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108255129 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108255129
NCBI-ProteinID:
XP_017306324
Ensembl:
ENSIPUG00000023780
UniProt:
A0A2D0PK11
LinkDB
All DBs
Position
21:complement(15810140..15834738)
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AA seq
846 aa
AA seq
DB search
MVTTLPGHEVKLGTSTVQTLDGGDAMDPRSESTPASSGSSSDTTASAPVNVTVPVVNNGP
GIAKGLVTASSTSNTVIQASFVNAPSAPGGTATATIRSSMQPATLTINGNNSNASCVLTA
APLTHAQPPVNVSVSPAVPIKAESPQTVIQSAAHTGSPQVSPGAAKGAGLMHATTAVRGG
APVTGGGAPVTAAAAGGVRTIAPQQVLAPRLPQSTPGHPSIHNIQLPPGMVLVRSEAGQL
LMIPQQVLAHMQATRAATPASTTPGQVTSTQTPGATIMARPVTPTTIIKQGSPTTSSTTA
PTLQRPPVQPASVGSVLAVQPGTAQRMVTPTTGTSVTLATETMENVKKCKNFLSTLIKLA
TSAKQSSQTAANVKDLVKNLLEGTIEAEDFTSRLYKELNSSPQPYLVPFLKRSLPALRKL
TPDSLAFIQQSQGLQPTRPAATVVLTNTTTANAATVATATPAASVPSATPSISAGTAATI
ASAAVATAPRTLTQPSLATTSQPASLVLQSQQQGAIVKSPQVTLATPMVTLRGQPHSRIV
VGQPQVQVKQLNTVAVKPGMVSGAKVSPSPVAFNAAQKNKLKDASGGTFKDDDDINDVAS
MAGVNLSEESARILATNSELVGAVTRSCKDEAFLFSAALQRRILDIGKRFGVTDLGPEVV
NLVSHATQQRLQNLLEKVTVIAQQKNMNYKEDARFEQMTDVRAQLKFFEQLDQLEKQKKE
EQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELAQIRQRDANLTALAAIGPRKKRK
LDSPALGTDAEGSGSSASSSAGLSGGASRQFTRQRITRVNLRDLLFCLENEKESTRSQLL
YRALLK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggtaactactttgcctggccacgaagtcaagctcgggacgtcaacagtacaaactttg
gacggaggcgatgcgatggatccgcgttcagaaagcacgccagcgtcgagcggctcctcg
agcgatacaaccgcttcagctcccgttaacgttaccgtgccggtggtcaacaacgggccc
ggtatagcgaaaggacttgtgactgcatcttctacttcaaacaccgtgatccaggcgtct
ttcgtgaacgcgccgagcgcgccaggcggaaccgccaccgccaccatcaggtcatctatg
caacccgcgactttaaccattaacgggaataacagtaacgccagctgtgtgctgacagct
gcgccgctcacgcacgcgcagcctcctgtcaacgtgagcgtgagtccggcggtgccaatc
aaagccgagtcaccgcagaccgtgattcagagcgcggcccataccggatctccgcaggtc
tcccccggggcagccaaaggcgcagggctgatgcatgcgacgacggcggtgagaggcgga
gccccggtgacaggaggcggggctccggtgacagcagccgcggcgggaggcgtgaggacc
atcgcgccgcaacaggtgctcgcgccccgcctcccacagagcaccccgggtcaccccagc
atccacaacatccaacttcctccaggtatggtgctggtgcgaagcgaagccggccagttg
ctcatgatccctcagcaagtgctggctcacatgcaggccacacgcgctgcaactcctgcc
agcaccacgcccggacaggtcacctccacacagacccctggcgcaaccatcatggccaga
ccagtgactcccaccaccatcatcaagcagggatcacccacaaccagcagcaccactgct
cccacactgcagagaccacctgtacagccggcgtcggtgggctctgtgttggcagtgcag
ccgggtaccgcccagaggatggtaactcccactacggggaccagcgtcaccttggcaacg
gagacgatggaaaatgtgaagaagtgtaagaacttcctgtccacgctgatcaagctggcc
accagtgcgaagcagtcatcgcaaacggctgctaacgtcaaagatctggttaagaacttg
ctggaagggacgattgaagcggaggacttcaccagcaggttatacaaggagcttaactct
tcaccccagccttatctcgtgcctttcctaaagaggagtcttcctgcgctgagaaaactc
accccggactcgctggcctttatccagcagagccaaggcctgcagcccaccagacctgca
gccactgtggtgctgaccaacactacaacggctaatgctgccactgttgctaccgcaact
cctgctgcatctgtaccttctgcaactccatcgatttccgcagggactgcagcaaccatc
gcatctgctgcagttgccacggccccgcgcacactcacccagccctctcttgccaccacc
agccagcctgcttcactggtgttgcagtctcagcaacagggtgcgattgtgaagtccccc
caggttaccctggctactcccatggtaacgctcaggggtcagccgcacagccgcatcgta
gtggggcaacctcaagtgcaggtcaaacagcttaacacagtggctgtgaagcccgggatg
gtgagtggagcgaaggtctctcccagccccgtggcttttaatgcagctcagaagaacaag
ctgaaggatgcctctggggggacgttcaaggatgatgatgatatcaatgatgtagcctcc
atggcaggcgtgaatctatcggaggagagcgcacgaatcctggccaccaactccgagtta
gtgggggccgtgactcgctcatgcaaggatgaagcctttctgttctcagccgcactgcag
cgcaggatactggacatcggtaaacgttttggagtgacggatctgggtcccgaggtggta
aacctggtgtctcacgccactcagcagagactgcagaaccttttagagaaagtcaccgtc
attgcacagcaaaagaacatgaactataaggaggatgcacggttcgagcagatgactgat
gttcgcgcacagctgaagttctttgaacagctggaccagctggaaaaacagaagaaggaa
gagcaggagagggaaattctaatgaaggcagccaagtctcggtctcggcaggaggaccca
gagcagttgcggttgaaacagaaggccaaagagatgcaacagcaggaactcgctcagata
agacagagagatgccaacctgacagcgctggctgctatcggacccaggaaaaagaggaaa
cttgattcgcctgctctcggcactgacgcagagggttccgggtcttcagcgagctcgtct
gcgggtttgagtggcggcgcgtcacggcagttcacccgccaacgcatcacacgcgtaaac
ctcagggatctgctgttctgtctagagaacgagaaagaaagcacccgctcccagctgctc
taccgggctctgctcaaatag
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