KEGG   Ictalurus punctatus (channel catfish): 108255278
Entry
108255278         CDS       T04658                                 
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2 isoform X1
  KO
K14793  ribosomal RNA-processing protein 9
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ipu03009]
    108255278
Ribosome biogenesis [BR:ipu03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    108255278
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd CFAP251_N WD40_Gbeta NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 ASA1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C WDR90_beta-prop_4th DSE1_N Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IP5PC_F Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Aladin WD_LRWD1 WDR54 Beta-prop_WDR75_2nd Beta-prop_ACSF4 WD40_CFAP43 DUF5836 WDR93 Ntox15
Other DBs
NCBI-GeneID: 108255278
NCBI-ProteinID: XP_017306606
Ensembl: ENSIPUG00000021918
UniProt: A0A2D0PMG1
LinkDB
Position
21:18946042..18953537
AA seq 480 aa
MSFFIKKKSASMAAGKGEKSVAGKRKADNQGGKGRPQKLNKRQSEEISSESENENDDAQV
RKQKEVEGDEEIEETPQEKKLRLAKLYLEQLREEEEKKAEDEEFESDLIAGRLQEDVLEQ
KGKLQRRIAEELIAPDPAEIRLLRGHKLSVTCLVITPDEKHIFSASKDCSIIKWEVESGR
KVQKIAGGRKGTEERHVGHTGHVLCMAISSDGKYLATGDTNKLIMIWEAATCKHLYRFTG
HRDAVSGLAFRRGTHDLYSASHDRSVKVWNVDENAYVETLFGHQDAITGLDCLGRERCVT
AGGRDRTLRVWKIAEETQLVFNGHESSIDCIQLINEEHMVSGGDDGCVSVWSVNRKKPLT
TVKRAHGLHGDAGLEGPYWVSSVAALHNSDTVASGASGSHNASVQLWKCGPGFRGLEPLF
SIPVNGFVNSLKFSNTGKFLVAGVGQEHRLGRWWRMKEAKNGLYIIPLRRQNKETMTTEQ
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgtctttctttataaagaagaaatccgcctcaatggctgccgggaaaggcgaaaagtct
gttgctggcaagcggaaggctgataatcagggtggaaaagggcgtccacaaaagctcaat
aaacgccagagtgaggaaatctccagcgaatcagaaaacgaaaacgatgacgcgcaggtt
cgaaagcagaaggaggtggagggggacgaggagatcgaggagacgccgcaggagaagaag
ctgcgtctggctaagctttacctggagcagctgagagaagaagaggagaagaaggcggaa
gacgaggagtttgaatcagacctgatagccggacgcctgcaggaggacgtgctggagcag
aaaggcaaactgcagagacgcatcgctgaagagctcatagcgccggatcctgccgaaatc
cgcttgctgagaggacacaagctctccgtcacgtgtctggtcatcaccccggacgagaaa
cacatcttctccgcgtctaaagactgttccatcatcaagtgggaggtggagagcgggagg
aaggtgcagaagatcgcaggagggaggaaggggacggaggaacggcacgtgggtcacacg
ggacacgtcctctgcatggctatttcctctgatggcaaatacctggccacaggagacacg
aacaagctgatcatgatctgggaagctgctacgtgtaagcacctgtacaggttcacggga
cacagagacgccgtatcggggttggcgttcaggagaggaacacatgacctgtacagcgcc
tctcacgatcgctcagtcaaagtgtggaacgtggatgagaacgcttatgtagaaactcta
tttgggcatcaggacgcgatcacgggcttggactgcctcggacgggagaggtgtgtgacc
gcagggggccgcgatcgaacgctccgagtgtggaagatcgccgaggagacgcagctggtc
ttcaacgggcacgagagctccatcgactgcatccagctcataaacgaagagcacatggtt
tcaggcggcgatgacggctgcgtgtccgtctggtccgtgaacaggaagaagccgctgact
actgtgaagcgggcacacggtctccatggcgacgccgggctggaagggccgtattgggtg
tcctccgttgcagcgttgcacaactccgacaccgtagcctcaggtgcctcaggctcccat
aatgcctctgtgcagctgtggaagtgcgggccgggattccgaggcctggagccgctcttc
agcatcccagtgaatggttttgtgaatagtttgaaattctccaacacgggcaagttcctg
gtggccggcgttggacaggagcacagacttggccgatggtggaggatgaaggaggctaag
aacggactttacatcattcctctcagaagacagaacaaagagactatgacgactgagcaa
taa

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