Ictalurus punctatus (channel catfish): 108255332
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Entry
108255332 CDS
T04658
Symbol
thbs4a
Name
(RefSeq) thrombospondin-4a
KO
K04659
thrombospondin 2/3/4/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04145
Phagosome
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108255332 (thbs4a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108255332 (thbs4a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
108255332 (thbs4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108255332 (thbs4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108255332 (thbs4a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108255332 (thbs4a)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108255332 (thbs4a)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Phagocytosis
Opsonins
108255332 (thbs4a)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108255332 (thbs4a)
Exosomal proteins of colorectal cancer cells
108255332 (thbs4a)
Exosomal proteins of bladder cancer cells
108255332 (thbs4a)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108255332 (thbs4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_3
EGF_CA
COMP
cEGF
EGF_MSP1_1
EGF
DUF7630
HIN
Motif
Other DBs
NCBI-GeneID:
108255332
NCBI-ProteinID:
XP_017306725
Ensembl:
ENSIPUG00000019257
UniProt:
A0A2D0PNS7
LinkDB
All DBs
Position
22:complement(6597265..6607949)
Genome browser
AA seq
962 aa
AA seq
DB search
MVVWTRVLFSVHVVMQLTYMVTSQGIVYDLLVSPDCLPDLLQGGLKNKNVNDVFILTTFQ
VQNKAPVRVFRIYNPTDNTDHFDFTVHGKLNKVSLRYLKSNGKTGTATFLKVPLADGRPH
NVMLHFSGLTHGTPRMALYVDCRLVEIVEELPAAFKTLPSGPNRVALKTMSATSEDSVSD
LKLVLGESIENVVELQDCSLQQGESLQLLGISSKLEPGPMFELVQMIQDLKEKMDQQIQE
TANLRRIVMECVPCDGQNTRPDSKTKCAPGVCFQQSMCTETERGFKCAPCPEGYNGDGVH
CEDVDECQFNPCFPGVRCINTVPGFRCERCPRGYSGPELQGAGNTYAQLRKQVCNDIDEC
QSVDNGGCTPNSYCHNTLGSFYCGECKPGFTGDPTSGCKQTSGPQDPGSDPVDPAALTTR
LCGNGERNPCDVNAECIVERDGSISCVCNIGWAGNGYVCGKDTDIDAYPDKKLPCQDTYC
KKDNCMFVPNSGQEDADGDGKGDACDEDADSDGILNEKDNCWLTPNVNQKNSDEDPHGDA
CDNCLKVNNPDQRDTDQDGLGDDCDDDMDGDGVKNILDNCQRVPNRDQVDSDNDGVGDIC
DSCPDVPNPNQSDVDDDLVGDTCDTNSDSDGDGHQNTKDNCPTVMNSAQLDTDKDGLGDE
CDDDDDNDGVPDNKDNCRLVPNADQEDKDNDNVGDACTGDFDQDRVIDKIDTCPENAEIT
LTDFRAYQTVVLDPEGEAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFH
VNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQAVPFRAVAEPGIQLKAVKSKTGPG
EFLRNSLWHTGNTKDQVQLLWKDPRNVGWKDKVSYRWNLQHRPQVGYIRVRFYEGASMVA
DSGMVIDTSMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDYQEHVAQDSIRKEDTQDKS
TQ
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtatggacaagagtattgttcagtgtacatgtggttatgcagttaacctatatg
gtgacttcccaaggaattgtttatgatctcctggtgtcaccagattgtttgcctgatctc
ctgcaagggggactgaagaataagaacgtgaatgacgtttttatcctgacaacgtttcag
gtccagaataaagctccagtgcgtgttttccgcatttacaaccctacagacaacaccgat
cattttgatttcactgtacatgggaagctcaacaaagtctctctgaggtatctgaaaagc
aatggaaagacaggcacggctaccttccttaaagtgccgttggctgatggccggccgcac
aatgttatgctgcacttcagcgggctgacgcatggcactcctcgcatggctctgtatgtg
gactgcaggctggtggagatagtggaggaactgcctgctgcctttaagacactaccttct
ggccctaatcgagtggcattaaaaaccatgtcagctacatcagaagatagtgtgtcagac
cttaagctagttctgggtgaatcaatagagaatgttgtggagcttcaagactgttctctc
cagcaaggtgaatcactgcaattgctaggcatctcatcaaagctggagccaggccccatg
tttgaacttgtacagatgattcaagacctgaaagagaaaatggaccagcagatccaggag
actgcaaatttaaggagaatagttatggagtgtgttccatgtgatgggcaaaacaccagg
ccagactccaaaaccaagtgtgcgccaggagtgtgcttccagcagagcatgtgtactgag
acagagcgaggcttcaagtgtgcaccgtgtcctgaaggctataatggagacggagtccac
tgtgaggatgtggatgagtgtcagttcaacccgtgtttccctggtgtgcgatgcattaac
acagtcccagggttccggtgtgagagatgccccagagggtacagtgggccagagttgcag
ggtgcgggcaacacctacgcccagttacgtaagcaggtctgtaatgatatagacgagtgc
caaagtgtggacaatggaggctgcactcctaattcctattgccacaatacattgggttca
ttctactgtggagagtgtaagcctgggttcactggagacccgacaagtggctgcaagcag
acctctggacctcaggatcctggatctgatccggttgatcctgctgctctcactaccagg
ctgtgtgggaacggtgagcgcaacccctgcgatgtcaacgcggagtgtattgtggagaga
gatggaagcatcagctgtgtgtgcaacatcggctgggccggtaacggctacgtttgcggg
aaggacacggacatcgacgcataccctgacaaaaaacttccatgccaggatacatactgc
aaaaaggacaactgcatgtttgtgccgaattcaggccaggaagacgcagatggcgatgga
aaaggtgatgcctgcgatgaagatgcagacagcgatggaatcctcaatgagaaggacaac
tgctggctgaccccaaacgtaaaccagaagaacagtgatgaagatcctcatggtgacgca
tgtgacaactgcctaaaagtaaataacccagaccagcgggacacagaccaggatggactc
ggagatgattgtgacgatgacatggatggcgatggcgtgaaaaatattttggataactgc
cagagagttcccaaccgtgaccaagtggacagtgataatgatggtgtgggagatatttgt
gacagctgtcctgatgtgcccaaccccaaccagtcagatgtcgacgatgaccttgtagga
gacacgtgcgataccaacagtgacagtgatggggacggacaccagaacaccaaagataac
tgccctacagtcatgaacagcgctcagttagacacggacaaggacgggcttggggacgaa
tgcgatgatgatgacgataacgatggcgtgccagataataaagacaactgcagattggtg
cccaatgcagaccaagaagataaagacaatgacaatgtgggtgatgcatgtactggagac
tttgaccaggaccgggtgattgacaagatcgacacatgtcctgagaatgcagagatcaca
ctgacagacttcagagcatatcagactgtggtgttggacccggaaggcgaggctcagatt
gaccccaactgggtcgtcctcaatcagggcatggagatcgttcagacgatgaacagcgat
ccaggactcgcagtgggttacacagctttcagtggcgtggatttcgagggaactttccat
gtgaacactgtgactgacgatgactacgctggcttcatctttggctaccaggactcttcc
agtttctacgtggttatgtggaagcagacagagcagacgtactggcaggctgtgcctttc
agggccgtggctgaacctggcatccagctcaaggctgtgaaatccaagacggggcctggc
gagtttctgaggaactctctgtggcacacggggaacaccaaggatcaagtgcagttgctg
tggaaagatcctcgtaacgtaggctggaaggacaaggtctcataccgctggaacctgcag
catcggcctcaagtcggatacatcagggtccgtttctatgaaggcgccagcatggtggca
gactccggcatggtcatcgacacgagcatgagggggggccgtctgggcgtgttctgcttc
tcccaggaaaacatcatctggtccaatctgaaatatcgctgcaatgacacgatccctgaa
gactaccaggagcacgttgcacaggactccatcaggaaagaggatacacaggataagtct
acgcagtaa
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integrated database retrieval system
