Ictalurus punctatus (channel catfish): 108255406
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Entry
108255406 CDS
T04658
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108255406
09123 Folding, sorting and degradation
03018 RNA degradation
108255406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108255406
03041 Spliceosome [BR:
ipu03041
]
108255406
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108255406
mRNA cycle factors
Stress granule specific factors
108255406
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108255406
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_Nup35
RRM_occluded
SET_assoc
RBD_DEAH11
Nup35_RRM_2
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
108255406
NCBI-ProteinID:
XP_053530518
Ensembl:
ENSIPUG00000018724
UniProt:
A0A9F7R5K2
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All DBs
Position
22:6963690..6970484
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AA seq
652 aa
AA seq
DB search
MNQKSVMSSLYVGGLHPEVMENMLVEKFSPAGRIHSIRLCRDRKTGSSLGYAFVNFHRRA
EAERALEMLNYEPLMGRPMRIMWSHKDSSLRNTGMGKLFVRNLDNSIGNMALHDIFSTFG
KVLSCTVVNNETGSKGYGIVHFESLEAANMAIERLNGKLLNGCKVFVERFKPYEGHKAEA
GPHSQDFTNIYIRNLGEVVDETKLKNIFSKFGPVLKVHVETDEDKRSGYVKFEKHEDAQK
AVEEMNGMVMYGKQMYVTQAQTKAEQPNHKFEQVKMENCRSRGSGFVHPSSSQEATKARN
LHWTAQTMEPQRQLQLSDVQNMPDGVEPAPGHQQTSGTITPSSSQVPCVTVESTVITTPT
SVDTVQVADSEPAVESVSAEHTVPAVESVPAEHTVPAVESVPAEHTVPAVESVPAEHTVP
AVESVPAEHTVPAVDSVPAEHTVPAVESVPVVDTLPAVESVPVPAADKLPAPTQAPNADV
ICLPSTCMVSESEAGNMAIERPNGKLLNARKVFVERFKPREEHKAEAGPHSQFFTNIYIR
NLGEVVDETKLKNIFSKFGPVLNVHVVTDVNRKPKRSGYVKFEKHEDAQKAVQEMNGMVM
YGKQMYVTRAQTKAERPNHKFEQVKMENCRSRGSGFVHSSSSQEATMARNLH
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagaaatccgttatgtcctcactgtatgtgggtggtctgcaccctgaggtgatg
gagaacatgcttgtggagaaattcagccctgcaggacgaattcactccatcaggctctgc
agggacaggaagaccggctcttcactcggctacgctttcgtcaattttcatcgtcgagct
gaagctgagcgagcattggaaatgctcaattatgaacccctcatggggcggcccatgcgt
atcatgtggtctcataaggattcatccctcaggaacaccggcatgggaaaactgtttgtc
aggaatttggacaactccattggcaacatggcccttcatgacatcttctccacctttggg
aaagtcctttcctgcacggttgtaaataatgagaccgggtcaaaagggtatggcattgtc
cactttgagtctctggaggcggcgaatatggcgatagagaggctcaacggcaaactgcta
aacggctgcaaagtgtttgttgaacgcttcaaaccctatgaggggcacaaggctgaggcg
ggtccccactcccaagacttcacaaacatatatatcaggaacctgggtgaagtcgtggat
gaaacaaaactgaaaaacatcttcagcaagtttggtcctgtgctgaaagttcatgtggag
acagacgaggacaaacgttctggctatgtaaaatttgagaagcacgaggatgcacagaag
gctgtggaggagatgaatgggatggtgatgtacggcaagcagatgtatgtgacccaagcg
caaacgaaagcagagcaacccaatcacaagtttgagcaggtgaagatggaaaattgccgc
tccagggggtctggctttgtgcacccctcatcttcccaggaagccacgaaggccaggaat
ctgcactggactgcgcagaccatggagccacaacgtcagttacagctgtctgatgtccag
aatatgcccgatggtgttgaacctgccccggggcatcagcagaccagtggaaccatcaca
ccatcaagcagtcaggtgccatgtgtgactgtagagagtacagttataactacaccaaca
tctgtagatactgttcaagtggcagactcagagccagctgtagaaagtgtctcagctgaa
cacactgttccagctgtagaaagtgtcccagctgaacacactgttccagctgtagaaagt
gtcccagctgaacacactgttccagctgtagaaagtgtcccagctgaacacactgttcca
gctgtagaaagtgtcccagctgaacacactgttccagctgtagatagtgtcccagctgaa
cacactgttccagctgtagaaagtgtcccagttgtcgacactcttccagctgtagaaagt
gtcccagttccagctgcagataagcttccagctccaactcaagctccaaatgcagatgtt
atatgtcttccttctacatgtatggtgtctgaaagtgaagcgggtaatatggcgatagag
aggcccaacggcaaactgctgaacgcccgcaaagtgtttgttgaacgcttcaaaccccgt
gaggagcacaaggctgaggcgggtccccactcccaattcttcacaaacatatatatcagg
aacctgggtgaagtcgtggatgaaacaaaactgaaaaacatcttcagcaagtttggtcct
gtgctgaacgtccatgtggtgacagatgtgaacaggaagcccaaacgttctggctatgta
aaatttgagaagcacgaggatgcacagaaggctgtgcaggagatgaatgggatggtgatg
tacggcaagcagatgtatgtgacccgagcgcaaacgaaagcagagcgacccaatcacaag
tttgagcaggtgaagatggaaaattgccgctccagggggtctggtttcgtgcactcctca
tcttcccaggaagccacaatggccaggaatctgcactag
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