Ictalurus punctatus (channel catfish): 108255484
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Entry
108255484 CDS
T04658
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108255484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108255484
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108255484
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_17
TPR_11
TPR_8
TPR_16
TPR_12
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
PPTA
TTC22_N
TPR_Psidin_N
ARM_TT21_C
ANAPC8
CABIN1_N
COG4_N
HAT_PRP39_N
DUF7017
C5orf58
TPR_15
Motif
Other DBs
NCBI-GeneID:
108255484
NCBI-ProteinID:
XP_017306916
Ensembl:
ENSIPUG00000018203
UniProt:
A0A2D0PNC0
LinkDB
All DBs
Position
22:7184011..7213638
Genome browser
AA seq
1589 aa
AA seq
DB search
MTESWCGACAVCNCARKQLCTVTMSSKEVKSALKGARDAIKNKEFKEALKHCKAVLKLDK
NNYNAWVFIGVAASELEQPEQAQTAYRKAAELEPEQLLAWQGLANLYEKSDQADFKAELP
KIYQKLITLYETSDKVKCFDVSKKLVDIYQTEKNYLQVARVWRHLIQVREAEDGIETFEL
IELWREMIRLLLGSVEQQDNETQQHLLSAFEKALQLTEHVPSEDHKQLTQDYIKCLSKLP
HEVVKMKEMCDLMLSLYPKDSYPLEVLGKHYLLLDDCSEEAVSCYTRLLELDPVSSLAHF
GLGKKALQDKKYEDAIKSFGLGLRRMRSSVIGWYSLAQAELKMHKYSDSVLSSSQGLKGC
AGFSEDWTQKLIRVKLEALVRAGTEQSADEALGILSQMPDASNDPALLVLKGRAYLQKGK
LEEAFQVSSELLSSHPGSVEGLTIKGLTHRAEKEHQQAEQCFIEAVSQRPDSGELYFLLG
QLYWDMGEETRRDRSKVHTHLLKAAKLDSHRGSVFRYLGHYYREVAKDQGRARGCYKKAF
ELDSTDAEAGAATVDLSMEQGDMDSALVVLQAVTEIATPGSAKWAWMRRGLYHLKVGQHA
QATADLQAALRADPQDWVCWECLGEAYRNRHSFTAALKAFAKAHMLQPSSIYSLYQMASI
KQILGRFKEAAVEYQQIIETEEYVPALKGLGECLLAMAKTAMEDYLDGRAVDLIQEAIKY
LFRAVQKRADLSCLWKLLGDACTKCSSVSPNRICVLVPGVLCGTEPSDKNHTLDQKQLLS
LGERCYGRALKLMAEAPGLWCDLGLNYYHQSRLFLSTSTEPNVQPLLEKALQCVKKAVML
DSGNHTYWSALGVVAMTKGIENFALAQHSFIKSIRAEPNNVVAWTNLGTLYLKNLNIELA
HEAFKIAQSLEPLYVNCWIGQAFIAETVGSYDTMDLFRHTTELSTHTAGVKGYAYWVCST
LLDKSNRDSELYRYNIVQMNAVSAAQVALTKYTERIQTDAEAFVMMGFLNEHMKLKKQAA
GAYKRAVELLQNSSQTEELGFALRGYARALCDTDQWEEAVRHYSSTSLEELHDLTGMALA
CFRAGRLQESVNAYEKALAVASTEKEKAYILTALALLQHRLGNMDTAKTLLFKCSLLKEP
IPESLLCLCALGLVHGDATLASAALSELMKLDGALRGAVEEHCLLTCTLLALQGNYDAVQ
REASRAVFRNPGNPSLWALLSRLVPQYCPSKADGGAVAGSVACHASMTLGKRALLYSGVN
QLASGRHSGEDRRKNALKTTQRAVLLCPDDPAGWAGLMAACHTENVACALSGSSPCKEGL
ERVFMTLVSEKVKSLQREDGLLAQALEGWVLQQTVTGLKQSGLYGEAEALCSQVLSVSPE
HPAVFLLLRQVQCECLLLSDAGDCIPPTVLDQLSAAVMANPTSVSAWHWLAEVYRSQGLL
AQASVALRQSLQLTSQLGHYSGKLSSLLRLALLSLTPCMAGVGGAEWSSLVREACTEVLK
LGPCPVASLFQALLQFSIKMGARETRRLLEKIVYGPSSRDVKTVAAVARWYLLRHLHAKD
DLQLIDTLMMEAEAAGDLRLLEFHKQLFP
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatcatggtgtggcgcatgcgcagtctgcaattgtgcacggaagcagctgtgc
actgtgacaatgtcaagtaaagaagtcaaatcggctctaaaaggtgccagagacgctatc
aaaaacaaggagtttaaagaagctctgaaacactgcaaggctgttctgaagcttgacaag
aataactacaatgcctgggtgttcattggagttgcagcgagcgagctggagcagcctgag
caggcacagacagcctacagaaaagctgcagagctcgaacctgagcagctgcttgcatgg
cagggccttgcaaacctgtatgaaaaaagcgatcaagcagacttcaaagccgagctgccc
aaaatctatcaaaaactcataacgttatatgaaacttcggataaagtcaaatgttttgac
gtgagcaagaagttggtggacatctatcagacggaaaagaactacttacaggtggcgagg
gtgtggcggcacctcattcaggtgagagaggcagaggatgggattgagaccttcgagctg
attgagctatggagagaaatgatcaggctgctcctgggctcagtggaacagcaggacaat
gagacacagcaacatctcctgtctgcttttgaaaaagctcttcagctaacagaacatgtg
cctagtgaggaccataaacaactcacccaagattacattaaatgcctgtcaaaactccct
catgaagtggtgaagatgaaggagatgtgtgatctcatgctgtccctctacccaaaagac
tcatatcctctggaagttctagggaagcattatttacttttagatgattgcagtgaagaa
gctgttagctgttacactcgtctcttggagctggacccggtcagttcactggcccacttt
ggtctgggtaaaaaagctctccaggacaagaaatatgaggatgctatcaagagctttggt
cttggactgcgacggatgcgctccagtgtcattggatggtacagtctcgctcaggctgag
ctgaaaatgcacaaatactctgatagtgtgctgtcctccagccaagggctgaaggggtgt
gcaggatttagtgaagactggacccagaagctgatcagagtaaagctggaggcgctggtg
agagctggaacagagcagagtgcagatgaagctctggggatcctttctcagatgccagac
gctagcaacgatcctgctctgttagtgttgaagggtagagcctatttacagaaggggaag
cttgaagaagcctttcaggtgtcttccgagttgctgagctcgcatcctggctctgtggaa
ggtttaaccataaagggactgacacatagagctgaaaaggaacaccagcaggcagagcaa
tgttttattgaagctgtgtctcagaggccagacagtggggagttgtacttcctactaggg
cagctttattgggacatgggggaagagacccggagggacaggagcaaagttcacactcat
ctgctgaaggctgccaagctggattcccatcgtggctctgtgttccgctacctgggtcac
tactatagggaggtggccaaagaccagggccgagctagaggctgctacaagaaagcattt
gagctggactccactgatgcagaggctggagcggcaactgtagacctcagcatggagcag
ggagacatggactccgctttagtagttcttcaggcagtgacagagatagcaactcctggt
tcagccaaatgggcctggatgagaagaggcctgtatcatcttaaagtgggacagcatgcg
caggctaccgcagacctgcaggcagcgttgcgggctgaccctcaagactgggtgtgttgg
gagtgtttaggtgaggcctaccgcaaccgccacagctttacagctgctctcaaagctttt
gctaaggcccacatgctgcagcccagctccatctacagcctctaccagatggcctccatc
aagcagattctgggcaggttcaaagaggcggcagtggagtaccagcagataatagaaacc
gaagagtacgtgccagctctgaagggacttggagaatgtcttttggccatggctaaaaca
gcaatggaggactacctggatgggagagcagttgaccttatacaggaagccattaagtat
ttgttcagggcagtgcagaagcgtgcggatctctcatgtctgtggaagttgctgggagat
gcctgtacaaaatgcagttctgtttctccaaaccgaatctgtgtgctggtgcctggtgta
ctgtgtggaacagagccttcagataagaaccacacactggaccagaaacagctgctcagt
cttggggagagatgctacggccgtgctctgaaactgatggcagaagccccgggcctgtgg
tgtgacctgggcctcaactattaccaccagtcgagactgttcctgtctacatctacagaa
ccgaacgtccagccactgttggagaaagccctgcagtgtgttaaaaaggcagtcatgctg
gacagtgggaatcacacgtactggagtgcactgggggtcgtggctatgactaaaggaatt
gaaaactttgcccttgcacagcacagtttcatcaaatcaatcagagcagagccgaacaat
gttgtagcatggacaaaccttggaaccttgtacctcaagaacctgaacatcgagcttgca
cacgaggccttcaagattgcgcaatctctggagccgctgtatgtgaactgttggatcgga
caggcgttcattgctgagacagtaggaagctatgacactatggatctcttcagacacacc
actgagctcagcactcatactgcaggagtgaagggttatgcgtactgggtctgttccacg
ctactggacaagagtaaccgggactcggagttataccgctacaacatagtccagatgaac
gctgtctcggctgcccaggtggccttaaccaaatacacagagaggattcagacggatgcc
gaagcttttgtgatgatgggcttcctgaatgaacacatgaagctgaaaaagcaggcagct
ggagcctataagagagctgtggagctgctccagaacagctcacaaacagaagaactcggc
ttcgctctcagaggctacgctcgggcactctgtgacacagatcagtgggaagaggctgtc
cgtcattattcctccacatcactagaggagctgcatgatctcacaggcatggctctggcc
tgctttagagctggacgtctccaggagagtgttaatgcctatgagaaagctcttgcagtg
gcttccactgagaaggagaaagcctatatactaacagctctggctttactacagcaccga
ttggggaacatggacactgccaaaactttgctctttaagtgctcattgctgaaggagccg
attccagaaagtttgctgtgtctatgtgctttgggcctggtccatggagacgccaccctg
gccagcgctgccctctcggagctgatgaagctggatggagctttgaggggtgctgtggaa
gagcactgcctgctcacttgcaccctgctggccttacagggcaactacgacgctgtgcag
agagaggcttccagggcagtgttcagaaacccaggaaatccgtccctgtgggcgctgctg
tccagactggtgccacagtactgtcccagcaaagctgacggtggagccgtagcaggtagc
gtggcatgtcatgctagcatgactctaggaaagagggcactgctgtacagcggagtaaat
cagttggcctcaggcagacactctggggaagacaggaggaaaaatgctctaaagaccacc
cagagagctgtactgctctgtccagacgatcctgcggggtgggcggggcttatggctgca
tgtcacacagagaatgtagcatgtgccctgtcaggctcctccccctgcaaagagggtcta
gagagagtgtttatgacactggtgtcagagaaagtgaaaagcctgcagagagaggatggg
cttttggctcaggctctggaaggctgggttctgcagcagactgtgacaggactcaaacag
agcggcctgtatggtgaagctgaagccctgtgttcacaggtgttgagtgtgtctcctgag
catcctgcagtgttcctgttgctcaggcaggttcagtgcgaatgcctcctgctgtctgat
gccggagactgcatccccccaacagtgctggaccagctgagtgctgctgtcatggccaac
ccaacctcagtgtctgcttggcactggctggcggaggtgtaccgctctcagggtttgctg
gcacaggcctcggtggctctgagacagagtctgcagctcacctctcagctcggtcactac
agcgggaagctcagcagtctgctgcgcctcgccctgctctctctcaccccctgcatggct
ggggttggaggcgcggaatggagcagtcttgttcgtgaagcctgtaccgaggtgctgaag
ctgggtccgtgtcctgtggcttcacttttccaggctctgcttcagttctccatcaagatg
ggagccagggagacacggcgtctgttggagaagatcgtttacggaccgagttcaagagat
gtgaaaactgtagcggcggtggctcgctggtacctcctgcgccacctacatgccaaagac
gacctgcagctgatagataccctgatgatggaggctgaagcagcaggagacctcaggctg
ctagagttccataaacagctgttcccctga
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integrated database retrieval system
