Ictalurus punctatus (channel catfish): 108255545
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Entry
108255545 CDS
T04658
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108255545 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
108255545 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108255545 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108255545 (gtf2h2)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108255545 (gtf2h2)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108255545 (gtf2h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
108255545
NCBI-ProteinID:
XP_053530611
UniProt:
W5UAW6
LinkDB
All DBs
Position
22:2207388..2213155
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AA seq
393 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILFEAKRKRVFESHGQVRLGMMRH
LYVVIDSSRTMEDQDLKPNRLTSTLKLMEYFVDEYFDQNPISQIGIITTKNKRAEILTDL
AGNPKKHIAALKKAVDSGCVGEPSLYNALSIAMQTLKHMPGHTSREILVIFSSLTTCDPA
NIYELIQTLKSLKIRVSVIGLSAEVRVCTVLTRETGGSYNVILDESHFKDLLTFHVKPPP
ASSSSECSLIRMGFPQHVIASASDQDSKPSFSMSHLESSDAGPELSLGGYFCPQCRAKYT
ELPVECKVCGLTLVSAPHLARSFHHLFPLEAFQERPLEERTGDGFCQACQAELKDKSVFT
CPVCASVFCVECDVFIHDTLHCCPCCIQRQGAS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggaaccggagagagcaaagcgctgggaaggaggttatgaacgaacatgggag
gtgctgaaggaggatgagtccgggtccctgaaagccaccgtagaggaaattctcttcgag
gccaaacggaagagagtgttcgagagtcatgggcaggttcggctgggaatgatgcgtcac
ctgtatgtggtgatcgactcgtctcggacaatggaggaccaggacctgaagcccaacaga
ctcacgtccacgctgaagctcatggaatactttgtcgacgagtactttgaccagaacccc
attagccagatcggaatcatcaccaccaagaacaaacgagccgagatactcactgacctg
gcaggaaaccctaagaagcacatagcggcgctgaagaaagccgtggactcggggtgtgtg
ggcgagccgtctctgtacaacgccctcagcatcgccatgcagacgctcaaacacatgcca
ggacacaccagccgagagattctggtcatcttcagcagtctgaccacctgcgatccagcc
aacatctacgaactcatccagacactgaaatcgcttaaaatccgagtgtctgtgatcgga
ctgtctgctgaggttcgggtgtgtaccgttctcaccagagaaacaggaggaagctacaac
gtgatcctggacgagagccacttcaaggacctgctgacgttccacgtgaagcctcctcct
gccagctcctcctccgagtgctcgctcattcgcatgggcttccctcagcacgtcatcgct
tctgcatctgatcaggactccaagccttccttcagcatgtcgcacttggagagctcagac
gcaggaccagaactcagtctcggtggttatttctgtcctcagtgtagagccaaatacacc
gagctgcccgtcgagtgtaaagtgtgtggtctgacactggtctccgcccctcacctggct
cgctccttccaccacctctttcctctggaagcgtttcaggagcgtccgctggaggagcgc
acaggcgacgggttctgtcaagcctgccaagcagagctgaaggacaaaagtgtgttcacg
tgtccggtgtgcgcgagtgtgttctgcgtggagtgtgacgtgttcattcacgacacactg
cactgttgcccgtgctgtatacagaggcagggcgcgtcctga
DBGET
integrated database retrieval system
