Ictalurus punctatus (channel catfish): 108255694
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Entry
108255694 CDS
T04658
Name
(RefSeq) general transcription factor IIH subunit 3 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108255694
09124 Replication and repair
03420 Nucleotide excision repair
108255694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108255694
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108255694
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108255694
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108255694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
108255694
NCBI-ProteinID:
XP_017307315
Ensembl:
ENSIPUG00000020325
UniProt:
A0A2D0PQF2
LinkDB
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Position
22:complement(5970859..5976799)
Genome browser
AA seq
300 aa
AA seq
DB search
MASEDEISLLVIVVDVNPIWWGQQSQRQPEFTLSKCLDAVIVMANSHLVMTRTNKLAIIA
SHCQENHFLYPSKYWKAGEASGDHVSGPGDGKYELLSVADDVIADEIRNLMSRTQVRGHQ
TDTLLAGSLAKALCYIHRVSKELEAGRDLKSRILVIKAAEDCALQYMNFMNVIFAAQKQN
VLIDACVLDSDSGLLQQACDITGGLYLKIPQKTALAQYLLWVFLPDADQRSQLVLPPPVH
VDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKIPLPQMMKPKKKKLKAAN
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagaagacgaaattagtcttctggtcattgtggtagatgtcaacccgatatgg
tggggtcagcagtctcagagacaacctgagttcacactgtccaaatgtctggatgcggtg
atcgtcatggcgaactctcacctggtgatgaccagaaccaacaaactggccatcatcgcg
agccactgccaggagaatcactttctatacccaagcaagtactggaaagcaggagaagct
tccggagatcacgtgtccggacccggcgacggcaaatacgagctactgtccgttgctgac
gacgtcatcgctgatgagatcaggaatctcatgtccaggacacaagtgagaggccaccag
accgacacgttactggctggatccctcgccaaagctctctgctatattcatcgggtgtct
aaggaactggaagccggtcgagacttgaagtcgaggatactggtgataaaagcagctgag
gattgtgctctgcagtacatgaacttcatgaacgtgatctttgctgcacagaaacagaat
gtcctgattgatgcgtgtgtgctggactcagattcaggccttttgcagcaggcttgtgat
ataactggtggtctgtacctaaagattccccagaaaactgctctggcgcagtatttgttg
tgggttttcctgcctgacgcggatcagcgttcgcagttggtgcttcctccaccggtacac
gtggactacagggcagcctgcttctgtcaccgcaacctcatcgagatcggttatgtctgc
tcagtgtgcctgtcaatattctgcaactttagtcctatctgcacgacatgcgagacggcc
tttaagattccactgccgcagatgatgaaaccgaagaaaaagaaacttaaagctgcaaac
tga
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