Ictalurus punctatus (channel catfish): 108255710
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Entry
108255710 CDS
T04658
Name
(RefSeq) tRNA (uracil-5-)-methyltransferase homolog A isoform X1
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108255710
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
108255710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
Methyltransf_11
Methyltransf_4
Methyltransf_15
MTS
RRM_1
Ubie_methyltran
RRM_PARP14_3
PrmA
Cons_hypoth95
Methyltransf_23
Methyltransf_32
CMAS
Methyltransf_12
UPF0020
N6_N4_Mtase
RRM_occluded
RrnaAD
TPMT
Methyltransf_18
AviRa
Motif
Other DBs
NCBI-GeneID:
108255710
NCBI-ProteinID:
XP_017307354
Ensembl:
ENSIPUG00000016834
UniProt:
A0A2D0PQJ1
LinkDB
All DBs
Position
22:19391912..19403948
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AA seq
604 aa
AA seq
DB search
MADVTPPDSSILNEESDVQPGPPQENHQDDEPTAESINEGEEREGRSSSNFYPYIKEDLF
TSEIFKVKIQNLPKNISFNDLKRFLNKQWLNPHKIKLMGKQNFAFVTFKNQKDRDKAMNL
VHGVQWKGRYLSVRLAQPKADPLLRKRRQDEEAADGGQPAAKRLAEGHDCAEDEPLSVRI
ANAVTPLWQVPYDEQLSRKEREAEEILHTLTREIGNSNKAMLPWLFAQKERNKGVCCPLE
PIKPSPVQTEYRNKCEYVISVGADGEDKTVGFRLGKYKGGSCAVVSPSDTIHVPAAAKRV
VLTFQNYIRTTPYAVYSPERYEGHWRQLTVRTSRTNQIMAMVFFHPQKLPEDEIASLKES
LRRYFTDGEGKDSGVTSLQFVRMGQRTSAGTEDLPCELVAGDAWIHEELLGLRFRISPHS
FFQTNTLAAEVLYSSVGEWAQLDHDSTLLDVCCGTGTIGISLAKRVRKVIGIELCQEAVN
DAKVNAQANGLTNIEFHCGKAEDIFPTVLNAVVSPNVTAIVDPPRAGLHSRVILAIRRAE
HLKRLVYVSCNAKAAMNNFIDLCRAPSNRVHGAPFRPVRAMAVDLFPQTMHCETVLLFER
VDYR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgactcctccagactcctccatcctgaacgaggagtccgacgtccaaccg
ggacctccacaggagaatcaccaagacgacgaacctacagcagaaagcattaatgaagga
gaagagcgagaaggacgcagcagctccaacttctacccctacatcaaggaggatctgttc
acctctgagatcttcaaggtgaagatccagaacctgcccaagaacatcagcttcaacgac
ctgaagaggttcctgaacaaacaatggctgaacccgcacaagatcaagctgatggggaag
cagaacttcgccttcgtcaccttcaaaaaccagaaggaccgcgacaaggccatgaatctg
gtccatggcgtgcagtggaaggggagatacctgagcgtgcgcctggcccagcccaaagcc
gaccccctcctcaggaagcgcaggcaggatgaagaggcggcggacggaggacagcccgct
gccaaacgtctcgccgagggacacgactgcgccgaggacgaacccctcagtgtccggatc
gccaacgcggtcacgcccctgtggcaggtcccctatgacgagcagctcagtaggaaggag
cgcgaggcggaggagatcctgcacacgctcaccagggagataggtaacagtaataaagcc
atgctgccgtggctgtttgcgcagaaggagaggaataaaggtgtgtgctgtccgctcgag
cccatcaaaccctcacctgtacagacggagtacaggaataagtgtgagtatgtgatcagt
gtcggtgcggatggagaggataagacggtgggttttcgcttggggaagtataaaggaggt
tcgtgcgccgtggtgagtccctcagacaccatccacgtccctgcagcagccaaacgcgtc
gtcctcaccttccagaactacatcaggacgactccgtatgccgtgtacagtccggagagg
tacgagggccactggaggcagctcaccgtccgcaccagcagaaccaaccaaataatggcc
atggtcttcttccatccacagaaactgccggaggacgagatcgcgtctctgaaggagtct
ctgagacgctattttacagacggagaggggaaggacagcggcgtcacgtctctgcagttc
gtaagaatgggacagaggacgtctgcagggacggaggatctgccgtgtgagctggtggcc
ggtgacgcctggatccacgaggagctgctcggcctcagattccgcatttctcctcactct
ttcttccagacgaacactctggcagcggaggtgctgtactcgtctgtaggtgaatgggct
cagctggaccatgacagcaccttgctggacgtctgctgtggaacaggaaccatcggcatc
tctctggccaagagagtgaggaaggtgatcggaatcgagctgtgtcaggaggcggtgaac
gacgctaaagtgaacgcacaagctaacggtttgaccaacattgagttccactgtggtaaa
gcggaggacattttccccaccgtactcaacgccgtggtgtctcctaatgttactgctatt
gtagatcctccacgagcaggactgcattcccgggtgattctggcgatcaggcgggcggag
cacctgaagaggctggtgtacgtctcctgtaacgctaaagcggccatgaacaacttcatc
gacctgtgcagagctccgtctaaccgcgtccacggagcgccgttccgtccggtgcgagcg
atggccgtggacctgttccctcagaccatgcactgcgagaccgtcctgctgttcgagagg
gtcgactaccgctga
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