KEGG   Ictalurus punctatus (channel catfish): 108255721
Entry
108255721         CDS       T04658                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03030  DNA replication
ipu03410  Base excision repair
ipu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108255721
   03410 Base excision repair
    108255721
   03420 Nucleotide excision repair
    108255721
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipu03032]
    108255721
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108255721
Enzymes [BR:ipu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     108255721
DNA replication proteins [BR:ipu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    108255721
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      108255721
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2 CENP-B_dimeris APP_N
Other DBs
NCBI-GeneID: 108255721
NCBI-ProteinID: XP_053530552
Ensembl: ENSIPUG00000020097
UniProt: A0A9F7TET6
LinkDB
Position
22:complement(16400850..16429632)
AA seq 2286 aa
MVLQNSGRYKSDRSGGADQDKQQDDVSNLSAVKRLERSQFTDEMDARYGFERMKEPGEKT
GWLINMHPTEILDDDKRMISAVDYYFIQEDGNRFKVALPYKPYFYIATKQNCEREVVSFL
SKKYQGKIARLETVPKEDLDLHNHLVGLKRNYIKLSFNTVDDLIKVKREISPAVRKNRER
EKSNDAYTSMLSSALAGGSVMTADEDGTSKKMSDQLDNIVDMREYDVPYHIRLSIDLKIH
VAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAALIQRWFEHIHETKPNIF
VTYNGDFFDWPFIEVRASHHNLNMYQEIGFQKDSQGEYKASQSIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTLRHAVEEEEKIPLEQVTNFNEV
CDDIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGKPRAFHELNREEQARHE
KKRLGDYCRKAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
STAQENCDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSSNEKKPKVTISYPGAMLNI
MVKAGFTNDQYQELLDPASLTYETRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEVSVKKHFLRKWLKMPSLHDMDIRSILDWGYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISEMFTSEGKRQVANQT
EPGETPDMEDFRVPQRPLQPAILISTKRKRASQGEDSQTESQELELTQSWREILGPPPPM
GTTQEERLVWLRYHKKKWELQIRQRKERRKRRRMLDGEAQPTGGGVIRDGPTTGLGNFLR
RTARSILDMPWQIVQIAETSHPGLYKLWAVIGTDLHCMKLNIPRVFYVNQRVPKQEDGAT
YKKVNRILPRSNVVYYLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQ
LGCVCMVNKQVVRALAGREADTFELDHLEMRSLAQFGYLEPGSVRHIYLYHHSQGHKALF
GLFIPSQRKASVFVLDTVRSNQMPNLSTLYGTERTALLEKTSEELLPPEKHLFEVRAEND
VKAIYRAVQRILLSYKEERRGPTLIAVQSNWELRRLAAGMAVLEEFPVVPVHVTDDISYS
VLDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPEDISIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDERGSVEINAPGCFSTVCVELDIQSLAVNTIL
QSQHVNDMEGGASIGVSFDVIQHASLEDMMSGNQGATAVASYDETALCSNTFRILKSMVV
GWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLG
SSVVYGNFNRIILSTKKRRIDDAIAYVEYITNSIHSREIFHSLSITFSRCWEFLLWMDPA
NYGGVKGNVPSSIMYGETGTDKTKKGMKEGDNEGSEDEEDEDDEAEEERDGEEDAVEDLI
ESSWNIMQYLPQAASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQASQQ
PAGDVGALPGMITFSQEYVSSELTQNIFTITQKIQKKVCGTRSVAQPSEMFPVLPGSHLP
LNNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYVLPEV
ICHQCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYDTDSIEMALVEALRKKLMSYTL
QDLECAKCRGVKEANMPLYCSCAGDFSLTFSTKSFTEQVDVFRSIAAHYNMNFLLETIDW
ILRMSS
NT seq 6861 nt   +upstreamnt  +downstreamnt
atggttttacagaacagcgggagatataaatcagaccggagtggaggagcagatcaggac
aagcagcaggatgacgtgtctaatttgtctgccgttaagagactcgagcgcagtcagttc
acggatgaaatggacgcccgctacggcttcgaacgcatgaaggagccgggagaaaaaacc
ggctggttgatcaacatgcatccgacggagattctggatgatgataagcggatgatcagc
gcagtggattattatttcattcaggaggacggcaacaggtttaaggtggcactgccgtac
aaaccgtacttctacatcgccactaaacagaactgtgagagagaagtcgtgtcgttttta
tctaagaagtaccagggaaagatcgcaaggctcgagaccgttcccaaggaggacctggac
ctgcataaccacctagtgggactgaagaggaactacattaaactgtcctttaacacggtg
gacgatcttatcaaagtgaagcgggagatctcacctgctgtgaggaagaacagagagcgg
gagaaatccaacgacgcctacacgagcatgctgtccagcgcacttgcaggcggaagcgtg
atgacagccgacgaagacggcacgtctaagaaaatgtccgaccagctggacaacatcgtg
gacatgagggagtacgacgtgccttaccacattcgactgtccatcgacctcaagatccac
gtggcgcactggtataacgtgcggtacagaggaagcgcgtatcctccggagattgtgcgt
cgggatgacctggtggaaagaccagatcccgtcgttttggcatttgatatcgagaccacc
aaactcccgctgaagtttccagacgcagaaaccgaccagatcatgatgatctcgtacatg
atcgatgggcagggtttcctcatcaccaacagagagatcgtctccgaggacatcgaggat
ttcgagttcaccccgaagccggagtacgagggcccttttaccgtgtttaacgaacctgac
gaggccgctctcattcagagatggttcgaacacatccatgagactaaacccaacattttt
gtcacctataacggagacttcttcgactggccgttcatagaggtgcgcgcctctcaccac
aacctcaacatgtatcaagagatcgggtttcagaaggacagccagggcgagtacaaggcc
agccagtctattcacatggactgcctcaggtgggtaaagagagacagctacctgcctgtc
ggaagccacaacctgaaagcagcagcgaaggccaagctgagttacgaccctgtggagttg
gacccggaggagatgtgccgcatggccaccgaggagccgcagactttggccacctactcg
gtgtcagacgctgtggctacctactatctctacatgaaatatgttcaccccttcatcttc
gccctgtgcaccatcattcccatggagcctgacgaggtgttgcgtaaaggttcggggact
ctgtgcgaggcgttgttgatggtccaggctttccacgccaacatcgttttcccgaacaag
caggagcaggtgttcaataagctcacggacgacggccacgttctggactcggagacctac
gtgggcggccacgtcgaggctctggagtccggagtgttccgcagtgacatcccgtgccgc
ttcaaaatgaatccggcggcgttcgacttcctgcttcagagggtggagcggactctgcgt
catgccgtcgaagaagaggagaagatcccgctggagcaagtcacaaactttaacgaggtt
tgtgatgacatcaagaagaagctgatctcattgaaggaagtgccaaacaggatcgagtgt
cctcttatttaccatctcgacgtaggcgccatgtaccccaacatcatcctcaccaacagg
ttgcagccgtctgccatggtcgatgaggcgacctgtgctgcgtgtgattttaacaaacct
ggcgctacctgccagagaaggatggcctggcagtggagaggagagatcatgccggccagc
cgcagcgagttccaccgtattcagcagcagctggagtctgagaagttccctcctctgttt
cctaacggaaaaccgcgcgccttccacgagctcaaccgagaggagcaggctcggcacgag
aagaaacgtctgggagactactgccgaaaggcctataagaaggtgcacttgacaaggctg
gaagagagagtcaccacgatatgtcagagagagaattccttctacgtggacacggtgcga
gcgttccgagatcgccgctacgagtttaaaggactgcataaggtgtggaagaagaagctg
tctacggctcaagagaactgcgacgcagctgaagtgaagcgctgtaaaaatatggagatc
ctttacgagtctctgcagctcgcacataaatgcatcctcaattccttctacggttacgtc
atgagaaaaggagcgagatggtattccatggaaatggccggcattgtgtgtcacacggga
gccaacatcatcacccaggccagagagctgatcgaacagatcgggaggcctttagagctg
gacactgatggtatctggtgtgtcctgcctaactccttccctgagaactttgtcatcaag
tccagcaacgagaagaagcccaaagtgacgataagttaccccggggccatgctgaacatc
atggtcaaggcaggctttaccaacgatcagtaccaggagttgttggacccggcctcgctg
acgtacgagacgaggtccgagaacagcatcttcttcgaggtggatggaccgtacctggcc
atgatcctgcctgcatccaaagaggaaggcaagaagttgaagaagagatacgccgtgttt
aacgaggacggctccctggctgagctgaagggtttcgaggtaaagaggagaggagagctc
cagctcattaagatcttccagtcgtcggtgttcgaggctttcctcaaaggcaccaccctg
gaggaagtctacgcctcggtcgccaaagtggccgactactggctggacgtgctgtacagc
aaggcagcgaacatgccggacgccgagctcttcgagctgatttcggaaaatcgctccatg
tcccggaagctggaagactacggcgagcagaagtccacttccatcagcaccgccaaacgt
ctggcggagttcctcggagaccagatggtgaaggacgcgggtctgagctgtcgctacgtc
atctctcgcaaacccgagggctctcctgttaccgagagggcaattcctctggctatattc
caggctgaagttagcgttaagaagcacttcctgcgcaaatggctgaagatgcccagcctc
catgacatggacatcagatcaatcctggactggggttactacatcgaaagattaggcagt
gccatacagaagatcatcaccattccagcagcactacagcaggtgaaaaacccagtgccg
cgagtgcgccatccagactggctgcataagaagcttctggaaaagaacgacatctacaaa
cagaagaaaatcagcgagatgttcaccagtgaaggaaagagacaggtggccaatcagacg
gagccgggcgagactcccgatatggaggattttagggttccacagcgccccctacagcct
gccatcctcattagtactaagaggaagcgagcgtctcagggtgaggacagccagactgag
tctcaggagctggagctcacacagtcctggagagagatactgggtcctccgccacctatg
ggtacaacacaggaggagaggctggtgtggctgcgctaccataagaagaagtgggagctg
cagatccggcagaggaaagagcgcaggaagagacggcgcatgcttgacggagaagctcag
ccgaccggaggcggcgtgatcagggacggaccgacaacagggctagggaacttcctccgc
aggacggcccggagcattctagacatgccctggcaaatagtacagattgcagaaaccagt
cacccaggcctgtataagctgtgggcggtgatcggcactgacctgcactgcatgaagctt
aatatcccacgagtgttttatgtcaaccagagagtgccgaagcaggaagacggggccacg
tacaaaaaggtgaaccggattttgccgcgttccaacgtggtgtattacctgtaccagtac
tcagtgcctgaggacatgtatcaggaacacatcaatgagatcaacgcagacctttctgcc
ccagacatagagggcgtctacgagacacaggtgccgctgctattccgggcgctggtgcag
ctcggctgcgtgtgcatggtcaataagcaggtggtgagggcgctggctggccgagaggcc
gacaccttcgagctggatcacctggagatgaggtcgctcgctcagttcggctacctggag
ccaggcagcgtgagacacatctacctgtaccatcacagtcagggccacaaggctctgttc
ggcctcttcatcccctctcagcgcaaagccagcgtcttcgtcctcgacacggttcggagt
aaccagatgccgaacctgagcacgctgtacggaacggagcgcaccgcgctgttagagaag
acctcagaggagctgctgcctccagagaagcacctgttcgaagtgcgcgctgagaacgac
gtgaaggctatttaccgcgcagtgcagcgcattctgctcagctataaggaggagcgtcgc
ggtcccactctcatcgctgtgcagtctaactgggagctgcggcgtctggcggccggcatg
gccgtgctggaggagttccccgtggttcccgtgcacgtgaccgacgacatcagctacagc
gtgctggactggcaacggcacggcgcacgccgcatgatcaaacactacttaaacctggac
agctgtctttcacaggccttcgacatggcgaggtattaccacttgcctgtagggaacctg
cccgaggacatctccatatttggctcggacctctttctggctcgtcacttgcggaagcac
aaccacctgctgtggctttcacccacagcgagacccgacctcgggggcaaggaggccgac
gacagccgcctggtgatggagagcgacgagcggggctcggtggagatcaacgccccgggc
tgcttctctacagtgtgtgtggagttggacattcagagcttggcggtgaacaccatcctc
cagtcgcaacacgtgaacgacatggagggcggagccagcatcggcgtgagttttgatgtc
attcagcacgcatcattggaggacatgatgtcaggaaaccagggcgcgaccgctgtggct
agttatgatgagactgcactctgctccaataccttcaggatcctgaagagtatggtagtt
ggctgggtgcgtgagatcacccagtaccataacgtgtacgcagataatcaggtgatgcac
ttctaccgctggctgcgctcccccagctcgctcctgtacgacccggcgctgcaccgcacc
ctgctcaacatgatgaagaagattttcctccagctggtcgctgagtttaagcggctcggt
tcctccgtggtctacgggaacttcaaccgcatcatcctcagtaccaagaaaaggcgcatc
gacgacgccatcgcctacgtggagtacatcaccaacagcatccactcacgagagatcttc
cactctctgtccatcaccttctcccgatgctgggagttcctgctgtggatggatccggct
aactacggaggagtcaaagggaacgtgccctccagcatcatgtacggagagaccggcacg
gacaagacaaagaaaggaatgaaggaaggagacaatgagggcagtgaggatgaggaggat
gaggatgatgaagcagaggaagagcgagatggagaggaggatgcggtggaggacctgatt
gagagcagctggaacatcatgcagtacctgcctcaggctgcttcctgtcagaaatacttc
cttatgatcatctcagcgtacattgccgccgtgtatcacagcatgagggaggagctcagg
cgaaatgctcctggagccacgcccataaagaggcggggcggaagccaagcgtcccaacag
cctgccggtgacgtcggtgcactccctggcatgatcacgttctctcaggagtacgtgtcg
agcgagctcacgcagaacatcttcaccatcacacagaagatccagaaaaaggtgtgcggg
acccgcagcgtggctcaaccgtctgaaatgttccccgtgctgccaggatcccatctgccc
ctcaacaaccccgctctggagttcatcaaatacgtctgtcaggttctctcgctggacgcg
aacatcgtgaaccaggtgaacaagctgaagcgggatctcctgcgcttggtggacgtcggg
gagttctccgaggaggctcagttccgcgacccctgcaactcctacgtcctgccagaggtc
atctgccaccagtgcaacttctgccgtgatctcgacctctgcaaggacccttccgtagcc
caggacggttcggtcctgccgcagtggttctgctccaactgccaggcgcagtacgacacc
gactccatcgagatggcgctagtggaggctctgaggaagaagctgatgagttacactctg
caggacctggagtgtgccaaatgcagaggagtgaaggaagccaacatgcctctgtactgc
agctgcgcaggagacttcagtctcaccttcagcacaaagagcttcaccgagcaggtcgac
gtgttcagaagcatcgctgctcattacaacatgaacttcctgctggagaccatcgactgg
atcctgaggatgagcagttag

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