Ictalurus punctatus (channel catfish): 108255735
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Entry
108255735 CDS
T04658
Name
(RefSeq) polyadenylate-binding protein 1A-like
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108255735
09123 Folding, sorting and degradation
03018 RNA degradation
108255735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108255735
03041 Spliceosome [BR:
ipu03041
]
108255735
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108255735
mRNA cycle factors
Stress granule specific factors
108255735
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108255735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
UPF0515
Motif
Other DBs
NCBI-GeneID:
108255735
NCBI-ProteinID:
XP_017307395
UniProt:
A0A2D0PQN7
LinkDB
All DBs
Position
22:complement(14804279..14806222)
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AA seq
503 aa
AA seq
DB search
MSHKMTAALYVGGLHPEVTEEMLARTFSHAGRIHSIRICRDWKTRSSRGYAFVNFQQRAD
AERAIEMFHSELLMGRPMCVQWSQRDSSLRNSSIGKLFIKNLDESIDTLALLDTFSAFGK
VLSCKVVGDENGSKGYGYVHFESAEAADFAMNRLNGKLLNDRKVSIEHFKSREEREAQAG
RWGRKPVYVGVAQQKEECQVYPAHQNRQRMASMQAQNLAVSYTPCQKVEPHTDLLWTAQT
IQSQHVQNIPDVIQPAPVHQQTGSTITSTSQAPCMNEECITIITPTTDGTVPVADTVPAV
ETVPPVDSVPAVDTLPGADTLPSLESVPLVETVPPVDSVSDLGSTADEVPAPPQAPDAAE
MPSTSISEVQQHKDTTDVATYPPAGKRLTIYMLESSRLDDQMQMAHDHLLPLIEEIHPTQ
ANKITWMLLQDANNFEVIDMIAYPELLRTKVDEMDALLKAREAGYKPETLKMSLNNNNNK
KKNNKKRKNKYITINHCNQYCTY
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagccacaaaatgacggccgcactgtatgtgggtggtctgcaccccgaggtgacggaa
gaaatgcttgcgaggacgttcagccacgcaggccgcattcactccatccggatctgcagg
gactggaagacccgctcctcacgcggctacgcttttgtcaactttcagcagcgggccgac
gctgagcgagcaatagaaatgtttcattctgagctccttatgggacggccgatgtgcgtc
cagtggtctcagagggattcatccctgaggaactccagcattggaaaactgttcatcaag
aacctggacgagtcgattgacaccttggcccttttagacaccttctcggcctttgggaag
gtcctgtcttgcaaggttgtaggtgacgagaacgggtcgaaaggatacggctacgtccat
tttgagtctgcagaggcagcggattttgcgatgaacaggctcaacggcaaactgttgaac
gaccgtaaagtctccattgagcactttaagtcccgtgaggagcgcgaggctcaggcgggc
cgctggggcaggaagccggtgtacgtgggtgtggcccagcagaaagaggaatgtcaggtc
taccctgcccatcagaacaggcagaggatggcgagcatgcaggctcagaacctggctgtg
tcttacaccccctgccagaaggtcgagccccacacggatctgctctggactgcccagacc
atccagtcacaacatgtccagaatatacccgatgtgattcaacctgcaccggtgcatcag
cagaccggtagcaccatcacatcaactagtcaggcaccatgtatgaacgaagagtgtata
accatcattacaccaacaactgatggtactgttccagtggcagacacagtgccagctgta
gagacagttccacctgtagatagtgtcccagctgtagacactcttccaggtgcagacact
cttccctctctggaaagtgtcccccttgtagagacagttccacctgtagatagtgtctcg
gatctaggttcaactgcagatgaggttccagctccacctcaagctccagatgcagctgaa
atgccttctacatccatcagtgaagtgcagcagcacaaggacacaacggatgtagccaca
tatccaccagctgggaagcgtctgactatctacatgttggagtcatctcgtttagacgac
cagatgcagatggcgcacgatcacctgttacctctgatcgaggaaatccacccgactcag
gctaacaagatcacctggatgcttttgcaggatgcgaacaattttgaggtcatagacatg
attgcatatcctgagctcctgcgtaccaaggtggatgaaatggacgcactcctgaaggcc
agggaagctggatacaagccggaaaccctgaagatgtcattaaacaacaacaacaacaag
aagaagaacaacaagaagagaaagaataaatacattacaataaaccactgcaaccaatat
tgtacatattaa
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