Ictalurus punctatus (channel catfish): 108255836
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Entry
108255836 CDS
T04658
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X4
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108255836 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108255836 (smarca2)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108255836 (smarca2)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108255836 (smarca2)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
108255836 (smarca2)
Chromatin remodeling factors
BAF complex
108255836 (smarca2)
PBAF complex
108255836 (smarca2)
GBAF(ncBAF) complex
108255836 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
108255836
NCBI-ProteinID:
XP_017307603
Ensembl:
ENSIPUG00000011060
UniProt:
A0A2D0PLX7
LinkDB
All DBs
Position
22:12456741..12512787
Genome browser
AA seq
1593 aa
AA seq
DB search
MSTPTDPSVGMSHPGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHGMQS
QGSGEYPQEGVHPMHKPMEGMHEKGMGDEMHYGQIKGVGMRSLHSGMGPPQSPMDQHSQG
YMSPHPSPMASSGPEHVSSPMSGGGPTPPQMPQAQPGPMMPMEPQAMGQQGRGHSAFSPV
QLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQPVNTGPYNRPSGMSGPHG
SPVSGLCSAPGVQTHAPSPGAKPWTEGQGAEACSGSQKLPVPAPSGRPSPAPPQAPTAAQ
VTPSTSLTPQSQSQPQAQQPQQQQGPGQTSLIIQLQQKQNRITPIQKPQGLDPVELLQER
EYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRDTTL
ETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYH
RSISGKIQKLSKAVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRL
AYLLQQTDEYVANLTSLVYEHKAAQAAKEKKKRKKKKKKEEGVIEVLGTIGPDGEPIDES
SQMSELPVKVIQTQTGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDE
EEVVSRAESEEKKIIDPSSDEVSQAAKHIIESAKQDVDDEYSVQAGETSSQSYYGVAHAV
IERVERQSSLLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLME
YKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGMPSMRRSLLPQLRSGKFNVLIT
TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL
PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLR
RLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNT
IMQLKKICNHPYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLQSTNHR
VLLFCQMTSLMTIMEDYFAYRNFLYLRLDGTTKAEDRAALLKKFNDEGSQYFVFLLSTRA
GGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA
KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEVLRLSERERELSSEEDEVP
DDETLNQMIARNEEEFELFMRMDLDRRREDARNPKRKPRLMEEDELPAWIIKDDAEVERL
TCEEEKEKMFPRGSRHRRDVDYSDALTEKQWLRAIEDGNLEEMEEEIRLKKRKRRRYLDK
GSRREDGDKAKKRRGRPPAEKLSPNPPKLTKQMSAIIETVVNYRDGSGRQLSEVFVQLPS
RKELPEYYELIRKPVDFKKIKERVRNHKYRSLGDLEKDVMLLCHNAQTYNLEGSQIFEDS
IVLQSVFRSARQKIAKEESEDDSNDEDDEESEAESKSVKVKIKLSKREERSQERGKKRPS
RVKAKPVVSDDDSDEELEENESRCLKRRSGQDS
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccaactgatccgtcagtcggaatgtcccaccctggtccttcccctggtgct
ggcctttctcctgggccaattttaggccccagtcccgggccaggcccctctccaggctct
gtccacagcatgatgggcccgagcccaggacctcctagtgtacctcatggcatgcagagc
caggggtcaggagaatatcctcaggagggcgtgcatcccatgcacaagcccatggaagga
atgcatgagaagggcatgggagacgaaatgcactatgggcagatcaaaggtgttggcatg
agatccctgcacagtggcatgggcccacctcagagtccaatggatcagcacagccaagga
tacatgtcacctcacccttccccaatggctagctctggacctgagcatgtttcaagcccc
atgtctggagggggtcctaccccacctcagatgccccaggctcagccaggccccatgatg
ccgatggaacctcaggcaatgggacagcagggccgtggccactctgccttcagccctgtt
caactgcagcagctccgtgctcagatacttgcttacaagatcttgggccgtggacagcct
ctgcccgagaacctgcaactggctgtccagggcaagaggagccttccaaccatgcagcag
cagcaacctgttaacactggaccttacaacaggccttcaggtatgtctgggccccatgga
agccctgtgtctggcctatgttccgctccgggcgtgcagacacatgctccaagccctggg
gcaaaaccatggacagaaggtcaaggtgctgaggcgtgtagcggctcccagaagctccct
gtgccggcccctagtggcaggccctctcctgctcctcctcaggctcccacagccgcccag
gtcacgcccagtacatctctcacaccacagtcccaatcacaaccccaagcccagcaaccc
cagcagcagcagggccctgggcagacctcgctcattatccagctccagcagaagcagaac
cgcatcacacccatccagaaaccacagggcctggacccagtggagcttctacaggagcga
gagtacaggttgcaggccaggattgctcatagaattcaagagctggagaatttgcctggt
tctttgcctcctgacctgagaactaaagcaaccgtcgagctgaaggccttaagacttctc
aattttcaacggcagttgcggcaggacgttgttgcttgcatgcgcagagataccactttg
gagacagcattgaattccaaggcctacaagcgcagtaagaggcagacactgagagaggcg
cgcatgactgagaagctggaaaagcagcagaaaattgaacaggagagaaagcggcgtcag
aaacatcaggaataccttaacagcatcctccagcatgctaaagacttcaaggagtatcac
cgatcgatatctggaaagatccagaagttgtccaaggccgtggccacatggcataccaat
acagagagggagcaaaagaaggagacggagagaatcgagaaagagaggatgagaaggctg
atggcagaggatgaggagggctacaggaagctgattgaccagaagaaggacaagcgtcta
gcctacctgctccagcagaccgatgagtatgtggccaacctcacttccttggtctatgaa
cacaaggctgcccaggctgccaaggaaaaaaagaagaggaagaagaagaagaagaaggaa
gaaggggttattgaggtacttggaacaattggacctgatggggagcccattgatgagagc
agtcagatgagtgaactcccagtcaaagtcattcagacgcagacagggaaggtactacag
ggcacagatgctcccaagtctagccagttggaggcctggcttgagatgaatcctggctat
gaagtggccccgaggtcagatagtgaagagagcggttcagagtttgaagaggaggatgaa
gaagaagtggtctcccgggcagaatcagaagaaaagaaaattattgatcccagtagtgat
gaggtgtctcaagcagcaaaacacatcatagagtctgccaagcaagatgtggatgatgag
tacagtgtccaggcaggagagaccagctcacagtcttactatggagtagcccatgctgtc
attgagagagtggagaggcagtcgtccttactgatcaatggcacactcaagcaataccag
atccaggggctggagtggatggtgtccctgtacaacaataacctaaatggcattctggcg
gatgagatggggctggggaagactatccaaaccattgcgctcatcacatacctaatggaa
tacaagagacttaatggtccttatctgatcatcgtgccgttgtcgactttgtccaactgg
gtttatgaacttgacaagtgggcaccatccattgtgaaaattgcttacaagggcatgcca
tccatgcggcggtcactgttgcctcagcttcgtagcgggaagttcaatgtcctcataacc
acctatgagtacatcatcaaagacaaacacattcttgctaagatccgctggaagtacatg
attgtagatgaaggccatcgaatgaagaaccaccactgcaagcttacacaagtgctgaac
acgcattacgtcgccccacgcaggcttttgctgacaggaacccctctgcagaacaaactt
cctgaactttgggctctgctcaactttctcctgcccacaatctttaaaagttgcagcact
tttgagcagtggttcaatgctccatttgccatgaccggggaaagggttgatctgaacgaa
gaggagactatcctgatcatccgccgtcttcacaaagtactgcgccctttcttgcttcgt
agactaaagaaggaagtggagtctcagctgcctgaaaaggtggagtatgtgatcaaatgt
gacatgtcagctattcagaaagttctctataggcacatgcaaggcaaaggcatcttgctc
acagatggctcagaaaaagacaagaagggtaaaggaggggcaaagactctgatgaacacc
atcatgcagctgaagaagatctgcaaccacccttatatgttccagcacattgaggagtct
tttgctgagcacttaggctacccaaatggcatcatcaatggtcctgatctgtaccgtgct
tctggaaaatttgagctactggaccgcattctgcctaagctgcagtccaccaatcacaga
gtgttgctcttctgtcagatgacttccctaatgaccatcatggaggattacttcgcctac
cgcaacttcctctacctacgtctagatggaacaaccaaagctgaagaccgtgctgcactg
ctgaaaaagtttaatgatgagggctcacagtattttgtctttctgctgagcacaagagca
gggggtctgggcctcaacctgcaggctgctgacactgttgtcatcttcgacagtgactgg
aacccccaccaggatttgcaggctcaggaccgcgctcaccgaatcggacagcagaatgag
gtgcgtgtgttgcgtctctgcaccgtcaacagcgtagaagagaagatcctcgctgctgcc
aaatataaacttaacgttgatcagaaggtcatccaggctggtatgttcgaccagaaatcc
tctagtcacgagcgcagggcttttctacaggccatcctggaacacgaggagcagaacgag
gaagtgctaagactgagcgagagagagagagagctgtcatcggaagaagatgaagttcca
gatgatgaaacgctaaatcaaatgattgcccgcaatgaggaggaatttgagcttttcatg
cgcatggacctggatcgacgtcgcgaagatgcgcgtaaccctaagcgtaagcctcgtctg
atggaggaggacgagctaccggcttggatcatcaaagacgatgctgaagtggagcgactc
acctgtgaggaagagaaagagaagatgttcccccgtggatcacgccaccgtagggatgtg
gattacagtgatgcgctgaccgagaaacagtggctgagagccattgaagatggcaacctg
gaggagatggaagaggagatccgtctgaagaagcgcaagcgcaggagatacttggacaaa
ggcagccgacgtgaggacggggacaaggctaaaaagaggaggggacgtcctccggccgag
aagctctcccccaaccctcccaaactcaccaaacagatgagcgccatcattgagacagtc
gtcaactacagagacggatcaggccgtcagctcagtgaggtgtttgtacaactgccttcc
aggaaagagctcccagagtactatgaactgattaggaagccagtggacttcaagaagata
aaggagagagtgcgcaaccataagtacaggagcttgggcgatttggaaaaagatgtaatg
ctcctctgtcacaatgctcaaacttacaatctagaaggctctcagatctttgaggactcc
atagtgctgcagtccgtgtttaggagtgccaggcagaagattgccaaagaggagagtgag
gacgacagcaatgacgaggatgatgaggagtcagaggctgagtctaagtcagtgaaggtg
aagatcaagctgagcaagcgggaggagcgtagccaagaaaggggcaagaagcggccgagc
cgggtcaaagccaagcctgtggtcagtgatgatgacagtgatgaagaactggaggagaat
gaatcacgctgtctgaagaggagaagtggacaggacagttaa
DBGET
integrated database retrieval system
